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Scripts for plotting data and phylogenetic trees for the Bacterial Response Regulator project (FixJ and KdpE)

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Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
AF2_models		AF2_models
MSAs		MSAs
clusters		clusters
data		data
plots		plots
scripts		scripts
.Rhistory		.Rhistory
README.md		README.md

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Scripts for generating plots and figures for the FixJ_KdpE project

Packages needed in R : ggtree, treeverse, check these links for more details:

1. https://github.com/YuLab-SMU/ggtree

2. https://yulab-smu.top/treedata-book/index.html

3. https://github.com/YuLab-SMU/treedataverse

Shortcut to install in R

install.packages("BiocManager") BiocManager::install("YuLab-SMU/treedataverse")

Packages needed in python : Matplotlib, Seaborn, Pandas, Numpy

Important please change the paths in the R and python scripts before running them

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Scripts for plotting data and phylogenetic trees for the Bacterial Response Regulator project (FixJ and KdpE)

phylogenetic-trees plotting heatmap-visualization

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