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tt_kmer_compare_wnode.cwl
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tt_kmer_compare_wnode.cwl
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cwlVersion: v1.0
label: "tt_kmer_compare_wnode"
doc: 'Pairwise comparison'
# File: tt_kmer_compare_wnode.cwl
class: Workflow # task type
inputs:
kmer_cache_sqlite: File
kmer_list: File
dist_method: string
minhash_signature: string
score_method: string
outputs:
distances:
type: File
outputSource: gpx_make_outputs/output_file
steps:
submit_kmer_compare:
run: ../progs/submit_kmer_compare_tmp_pairwise.cwl
in:
kmer_list: kmer_list
out: [output]
kmer_compare_wnode:
run: ../progs/kmer_compare_wnode.cwl
in:
kmer_cache_sqlite: kmer_cache_sqlite
kmer_list: kmer_list
jobs: submit_kmer_compare/output
dist_method: dist_method
minhash_signature: minhash_signature
score_method: score_method
out: [outdir]
gpx_make_outputs:
run: ../progs/gpx_make_outputs.cwl
in:
input_path: kmer_compare_wnode/outdir
num_partitions:
default: 1
output:
default: "distances.##.gz"
output_glob:
default: "distances.*.gz"
unzip:
default: "dont-unzip"
out: [output_file]