Updating ChIp-exo example

ncbi · Feb 18, 2020 · 551d187 · 551d187
1 parent 53a6669
commit 551d187
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/examples/chipexo-single.yaml b/examples/chipexo-single.yaml
@@ -9,9 +9,9 @@ default_context:
   create_demo: "n"
   number_spots: "1000000"
   organism: "Escherichia coli"
-  genome_dir: "/panfs/pan1.be-md.ncbi.nlm.nih.gov/alt_splicing/resources/genomes/NCBI/Escherichia_coli/K-12/MG1655/"
+  genome_dir: "/home/veraalva/Escherichia_coli/K-12/MG1655/"
   genome_name: "NC_000913.3"
-  aligner_index_dir: "/panfs/pan1.be-md.ncbi.nlm.nih.gov/alt_splicing/resources/indexes/BWA-0.7.17/"
+  aligner_index_dir: "/home/veraalva/BWA/"
   genome_fasta: "{{ cookiecutter.genome_dir}}/NC_000913.3.fa"
   genome_gtf: "{{ cookiecutter.genome_dir}}/NC_000913.3.gtf"
   genome_gff: "{{ cookiecutter.genome_dir}}/NC_000913.3.gff"
@@ -29,4 +29,4 @@ default_context:
   cwl_workflow_repo: "https://github.com/ncbi/cwl-ngs-workflows-cbb"
   create_virtualenv: "n"
   use_gnu_parallel: "y"
-  max_number_threads: "16"
+  max_number_threads: "32"