Addign dependendecies to setup

ncbi · Oct 5, 2020 · a5ecdc4 · a5ecdc4
1 parent 09c2a06
commit a5ecdc4
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Showing 3 changed files with 3 additions and 4 deletions.
diff --git a/docs/source/pipelines/rnaseqDGAPipeline.rst b/docs/source/pipelines/rnaseqDGAPipeline.rst
@@ -64,7 +64,7 @@ provide key biological processes, molecular functions, and cellular components f
     | Analysis               |                                       |                                        +-----------------+---------------+---------------------+----------------------------------+
     |                        |                                       |                                        | EdgeR           | Read Matrix   | TSV                 | `edgeR-2conditions.cwl`_         |
     +------------------------+---------------------------------------+----------------------------------------+-----------------+---------------+---------------------+----------------------------------+
-    | Go enrichment          | `05 - GO enrichment`_                 |                                        | `goenrichment`_ |               |                     |                                  |
+    | Go enrichment          | `05 - GO enrichment`_                 |                                        | `goenrichment`_ | gene IDs      | TSV                 |  Python code in the notebook     |
     +------------------------+---------------------------------------+----------------------------------------+-----------------+---------------+---------------------+----------------------------------+
 
 

diff --git a/docs/source/pipelines/sampleSheet.rst b/docs/source/pipelines/sampleSheet.rst
@@ -72,7 +72,7 @@ Sample sheet column names and description
       **SRR4053795_1.fastq.gz|SRR4053795_2.fastq.gz** must exist.
 
       The data files will be copied to the folder **data/{{dataset_name}}/**.
-    * **condition**: Conditions to analyze or group the samples. Avoid using non alphanumeric characters.
+    * **condition**: Conditions to group the samples. Use only alphanumeric characters.
 
       For RNASeq projects the differential gene expression will be generated comparing these conditions. If there are
       multiple conditions all comparisons will be generated. It must be at least two conditions.

diff --git a/setup.py b/setup.py
@@ -20,7 +20,7 @@ def readme():
     },
     data_files=[('', ['README.md'])],
     use_scm_version=True,
-    setup_requires=['setuptools_scm'],
+    setup_requires=['wheel', 'setuptools_scm'],
     description='PM4NGS generates a standard organizational structure for Next '
                 'Generation Sequencing (ngs) data analysis ',
     long_description=readme(),
@@ -50,7 +50,6 @@ def readme():
                       'seaborn',
                       'statsmodels',
                       'urllib3',
-                      'Wand',
                       'xmltodict'],
     classifiers=[
         'Development Status :: 4 - Beta',