Updating ChIP-Seq example

ncbi · Feb 6, 2020 · ada2ab6 · ada2ab6
1 parent cada763
commit ada2ab6
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/examples/chipseq-paired.yaml b/examples/chipseq-paired.yaml
@@ -9,9 +9,9 @@ default_context:
   create_demo: "y"
   number_spots: "2000000"
   organism: "mouse"
-  genome_dir: "/panfs/pan1.be-md.ncbi.nlm.nih.gov/alt_splicing/resources/genomes/UCSC/Mus_musculus/mm9"
+  genome_dir: "/home/veraalva/mm9"
   genome_name: "mm9"
-  aligner_index_dir: "/panfs/pan1.be-md.ncbi.nlm.nih.gov/alt_splicing/resources/indexes/BWA-0.7.17/"
+  aligner_index_dir: "/home/veraalva/BWA/"
   genome_fasta: "{{ cookiecutter.genome_dir}}/genome.fa"
   genome_gtf: "{{ cookiecutter.genome_dir}}/genes.gtf"
   genome_gff: "{{ cookiecutter.genome_dir}}/genes.gff"
@@ -29,4 +29,4 @@ default_context:
   cwl_workflow_repo: "https://github.com/ncbi/cwl-ngs-workflows-cbb"
   create_virtualenv: "n"
   use_gnu_parallel: "y"
-  max_number_threads: "16"
+  max_number_threads: "32"