Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Don't perform a transform if the products already exist #4

Closed
caufieldjh opened this issue Feb 15, 2022 · 0 comments · Fixed by #10
Closed

Don't perform a transform if the products already exist #4

caufieldjh opened this issue Feb 15, 2022 · 0 comments · Fixed by #10

Comments

@caufieldjh
Copy link
Collaborator

Don't want to waste time re-transforming the same thing repeatedly.
Check the output directory first to see if it already contains non-empty node and edgelists.
@caufieldjh caufieldjh linked a pull request Mar 1, 2022 that will close this issue
General issue-focused updates #10
Merged
@caufieldjh caufieldjh mentioned this issue Mar 1, 2022
Merged
caufieldjh added a commit that referenced this issue Mar 9, 2022
@caufieldjh
Merge pull request #10 from ncbo/adapt_to_biolink
0c8e570 
* Removing redundancy during transforms, including addressing #4 
* Preprocessing with ROBOT
* Catch ValueErrors due to invalid obojson contents
* Provide list of all completed + failed transforms
* Change validation behavior: it happens after each transform, not after all of them are done
* Add some tests and GH actions to run them
caufieldjh added a commit that referenced this issue Oct 20, 2022
@caufieldjh
Merge pull request #10 from ncbo/adapt_to_biolink
5270a73 
* Removing redundancy during transforms, including addressing #4 
* Preprocessing with ROBOT
* Catch ValueErrors due to invalid obojson contents
* Provide list of all completed + failed transforms
* Change validation behavior: it happens after each transform, not after all of them are done
* Add some tests and GH actions to run them
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

General issue-focused updates ncbo/BioPortal-to-KGX
1 participant
@caufieldjh