@ncbo

National Center for Biomedical Ontology

Pinned repositories

  1. bioportal_web_ui

    A rails application for biological ontologies, see http://bioportal.bioontology.org/

    Ruby 2 3

  2. ontologies_api

    Hypermedia API for NCBO's ontology-related projects

    Web Ontology Language 6 3

  3. ontologies_linked_data

    Models and serializers for ontologies and related artifacts backed by 4store

    Web Ontology Language 3 3

  • A rails application for biological ontologies, see http://bioportal.bioontology.org/

    Ruby 2 3 Updated Feb 18, 2017
  • Jobs that run on a regular basis in the NCBO infrastructure

    Web Ontology Language 1 2 Updated Feb 17, 2017
  • SPARQL client for Ruby.

    Ruby 1 49 Updated Feb 17, 2017
  • Models and serializers for ontologies and related artifacts backed by 4store

    Web Ontology Language 3 3 Updated Feb 17, 2017
  • Hypermedia API for NCBO's ontology-related projects

    Web Ontology Language 6 3 Updated Feb 17, 2017
  • A ruby application that allows to obtain recommendations for the most relevant ontologies based on an excerpt from a biomedical text or a list of keywords

    Web Ontology Language Updated Feb 17, 2017
  • To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.

    Web Ontology Language 6 5 Updated Feb 17, 2017
  • Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.

    Ruby 13 1 Updated Feb 17, 2017
  • BioMixer

    TypeScript 6 Updated Feb 14, 2017
  • Serves to consolidate (in Waffle) all public issues in BioPortal

    Updated Feb 8, 2017
  • A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.

    Web Ontology Language 1 2 Updated Dec 23, 2016
  • This is a django app that acts as a proxy for BioPortal's public triple store. It uses a modified version of the SNORQL browser to help the navigation across graphs and codemirror for syntax highlighting.

    JavaScript Updated Nov 30, 2016
  • Sample code that demonstrates the use of the NCBO REST services

    Java 9 12 Updated Nov 19, 2016
  • Loads citation records from the annual MEDLINE/PubMed XML format distribution into a MySQL table

    Java Updated Nov 3, 2016
  • Java-based code for running the Resource Access Tool population

    Java 1 Updated Oct 28, 2016
  • Library for working with NCBO's Resource Index backend system

    Ruby Updated Oct 27, 2016
  • A Ruby client for accessing NCBO's hypermedia api

    Ruby 1 Updated Oct 13, 2016
  • Scripts for migrating data from older NCBO systems to newer ones

    Ruby Updated Aug 6, 2016
  • These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

    Python 22 13 Updated May 6, 2016
  • Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org

    Java 23 16 Updated Apr 1, 2016
  • NIH NLM Value Set as a SKOS ontology

    Python Updated Aug 3, 2015
  • Knowledge transfer materials

    Updated Jul 16, 2015
  • Java 1 Updated Jun 8, 2015
  • A Flash-based visualization tool for ontologies using NCBO's retired REST API

    ActionScript Updated Jan 7, 2015
  • This is a copy of The Basic Formal Ontology (BFO). For testing and reliability NCBO/BioPortal needs to maintain its own copy of BFO.

    Updated Sep 24, 2014
  • cube

    Forked from square/cube

    Cube: A system for time series visualization.

    JavaScript 447 Updated Jul 30, 2014
  • 4store

    Forked from garlik/4store

    4store for BioPortal

    C 1 56 Updated Jul 29, 2014
  • A set scripts to create logs of calls that can be run in Jmeter. Only compatible with the new infrastructure to be released in 2013.

    Python 1 Updated Mar 21, 2014
  • Git hooks that are useful in the NCBO development context

    Ruby Updated Mar 10, 2014
  • A project to generate ontology mappings for BioPortal

    Ruby Updated Dec 4, 2013