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A rails application for biological ontologies, see http://bioportal.bioontology.org/
Hypermedia API for NCBO's ontology-related projects
Models and serializers for ontologies and related artifacts backed by 4store
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
Ontolobridge REST API client
Jobs that run on a regular basis in the NCBO infrastructure
Sample code that demonstrates the use of the NCBO REST services
Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
SPARQL client for Ruby.
A ruby application that allows to obtain recommendations for the most relevant ontologies based on an excerpt from a biomedical text or a list of keywords
To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.
4store for BioPortal
Scripts for migrating data from older NCBO systems to newer ones
A script to convert a BAO template to a CEDAR template
Bioportal Virtual Appliance
Library for working with NCBO's Resource Index backend system
A Ruby client for accessing NCBO's hypermedia api
A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.
Serves to consolidate (in Waffle) all public issues in BioPortal
This is a django app that acts as a proxy for BioPortal's public triple store. It uses a modified version of the SNORQL browser to help the navigation across graphs and codemirror for syntax highlighting.
Loads citation records from the annual MEDLINE/PubMed XML format distribution into a MySQL table
Java-based code for running the Resource Access Tool population
NIH NLM Value Set as a SKOS ontology
Knowledge transfer materials
A Flash-based visualization tool for ontologies using NCBO's retired REST API
This is a copy of The Basic Formal Ontology (BFO). For testing and reliability NCBO/BioPortal needs to maintain its own copy of BFO.
Cube: A system for time series visualization.