Pinned repositories

  1. bioportal_web_ui

    A rails application for biological ontologies, see http://bioportal.bioontology.org/

    Ruby 5 5

  2. ontologies_api

    Hypermedia API for NCBO's ontology-related projects

    Ruby 11 5

  3. ontologies_linked_data

    Models and serializers for ontologies and related artifacts backed by 4store

    Ruby 6 3

  • A rails application for biological ontologies, see http://bioportal.bioontology.org/

    Ruby 5 5 Updated Sep 13, 2018
  • Hypermedia API for NCBO's ontology-related projects

    Ruby 11 5 Updated Sep 11, 2018
  • Models and serializers for ontologies and related artifacts backed by 4store

    Ruby 6 3 Updated Sep 5, 2018
  • These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

    Python 28 18 Updated Aug 6, 2018
  • Ontolobridge REST API client

    Ruby Updated Jul 12, 2018
  • Jobs that run on a regular basis in the NCBO infrastructure

    Ruby 1 3 Updated Jul 6, 2018
  • Sample code that demonstrates the use of the NCBO REST services

    Java 16 20 Updated Jul 2, 2018
  • Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.

    Ruby 13 1 Updated Jun 19, 2018
  • SPARQL client for Ruby.

    Ruby 1 48 Unlicense Updated Jun 6, 2018
  • A ruby application that allows to obtain recommendations for the most relevant ontologies based on an excerpt from a biomedical text or a list of keywords

    Ruby Updated Apr 26, 2018
  • To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.

    Ruby 6 4 Updated Apr 26, 2018
  • 4store

    Forked from 4store/4store

    4store for BioPortal

    C 2 55 GPL-3.0 Updated Apr 11, 2018
  • Scripts for migrating data from older NCBO systems to newer ones

    Ruby Updated Apr 7, 2018
  • A script to convert a BAO template to a CEDAR template

    Ruby Updated Apr 4, 2018
  • Bioportal Virtual Appliance

    Ruby Updated Feb 21, 2018
  • Library for working with NCBO's Resource Index backend system

    Ruby MIT Updated Feb 7, 2018
  • A Ruby client for accessing NCBO's hypermedia api

    Ruby 1 Updated Feb 7, 2018
  • A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.

    Java 3 4 Updated Nov 21, 2017
  • BioMixer

    TypeScript 6 Updated Mar 9, 2017
  • Serves to consolidate (in Waffle) all public issues in BioPortal

    1 BSD-2-Clause Updated Feb 8, 2017
  • This is a django app that acts as a proxy for BioPortal's public triple store. It uses a modified version of the SNORQL browser to help the navigation across graphs and codemirror for syntax highlighting.

    JavaScript Updated Nov 30, 2016
  • Loads citation records from the annual MEDLINE/PubMed XML format distribution into a MySQL table

    Java 1 Updated Nov 3, 2016
  • Java-based code for running the Resource Access Tool population

    Java 1 BSD-3-Clause Updated Oct 28, 2016
  • Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org

    Java 25 18 Updated Apr 1, 2016
  • NIH NLM Value Set as a SKOS ontology

    Python Updated Aug 3, 2015
  • Knowledge transfer materials

    Updated Jul 16, 2015
  • Java 1 Updated Jun 8, 2015
  • A Flash-based visualization tool for ontologies using NCBO's retired REST API

    ActionScript Updated Jan 7, 2015
  • This is a copy of The Basic Formal Ontology (BFO). For testing and reliability NCBO/BioPortal needs to maintain its own copy of BFO.

    Updated Sep 24, 2014
  • cube

    Forked from square/cube

    Cube: A system for time series visualization.

    JavaScript 449 Updated Jul 30, 2014