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.gitignore
.gitignore
 
 
LICENSE
LICENSE
 
 
readme.md
readme.md
 
 
runall_tfbs.sh
runall_tfbs.sh
 
 
x01_make_bin_for_tfbs_combined.sh
x01_make_bin_for_tfbs_combined.sh
 
 
x02_count_overlapping_mutation_combined.sh
x02_count_overlapping_mutation_combined.sh
 
 
x03_count_peripheral_mutation.sh
x03_count_peripheral_mutation.sh
 
 
x04b_run_R_analysis_parallel.sh
x04b_run_R_analysis_parallel.sh
 
 

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TFBS analysis

Material

  • DHS data in BED
  • TFBS data in BED
  • Mutation data in BED
  • Callable region data in BED

Tools required

  • bedtools suite
  • UGE cluster system

Run

  1. Check paths and directories in x*.sh
  2. bash runall_tfbs.sh

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Custom TFBS analysis in ATL WGS project

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MIT license
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