Merge pull request #51 from neherlab/paper-reviews

Paper reviews
neherlab · Mar 8, 2023 · 058a0c4 · 058a0c4
2 parents e1c1101 + fa17de3
commit 058a0c4
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diff --git a/README.md b/README.md
@@ -106,7 +106,7 @@ Output all computed data to directory `pairs`
 
 ## Citing
 PanGraph: scalable bacterial pan-genome graph construction
-Nicholas Noll, Marco Molari, Richard Neher
+Nicholas Noll, Marco Molari, Liam P. Shaw, Richard Neher
 bioRxiv 2022.02.24.481757; doi: https://doi.org/10.1101/2022.02.24.481757
 
 

diff --git a/script/config/accession_numbers.csv b/script/config/accession_numbers.csv
@@ -0,0 +1,308 @@
+escherichia_coli,klebsiella_pneumoniae,helicobacter_pylori,mycobacterium_tuberculosis,prochlorococcus_marinus
+NC_017638,NZ_CP012987,NC_021216,NZ_CP010337,NC_008817
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+NC_017635,NZ_CP012745,NC_017371,NC_020559,NC_008816
+NZ_CP016358,NZ_CP012426,NC_020508,NC_012943,NC_005071
+NC_018661,NZ_CP008929,NC_017740,NZ_CP016794,NC_005072
+NZ_CP010121,NZ_CP014762,NZ_AP014710,NC_017522,NC_005042
+NC_011353,NZ_CP006923,NC_014256,NZ_AP014573,NC_007577
+NZ_CP010315,NZ_CP018707,NZ_AP013355,NZ_CP009426,NC_007335
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+NZ_CP015995,NZ_CP018735,NC_018937,NC_016768,
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+NZ_CP015831,NC_022082,NC_022130,NZ_CP016888,
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+NC_002695,NZ_CP009876,NC_011333,NZ_CP010340,
+NZ_CP010148,NZ_CP014294,NZ_AP013354,NZ_CP002882,
+NZ_CP010441,NZ_CP009872,NC_021882,NZ_CP007809,
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+NC_017631,NZ_CP018692,NZ_CP009259,NZ_CP010338,
+NZ_CP017438,NZ_CP014647,NC_017354,NC_002755,
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+NC_013654,NZ_CP006722,NC_017741,NZ_CP012506,
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diff --git a/script/config/accnums.json b/script/config/accnums.json
@@ -558,5 +558,17 @@
         "NC_012973",
         "NC_020509",
         "NC_017374"
+    ],
+    "prochlorococcus_marinus": [
+        "NC_008817",
+        "NC_009091",
+        "NC_008816",
+        "NC_005071",
+        "NC_005072",
+        "NC_005042",
+        "NC_007577",
+        "NC_007335",
+        "NC_009840",
+        "NC_008819"
     ]
 }