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@neidl-connor-lab

Connor lab

Tools from John Connor's lab @ the NEIDL

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  1. lasvShiny lasvShiny Public

    This Rshiny app allows users to explore protein multiplex data from Lassa fever patients in Nigeria. Main findings published in The Lancet Infectious Dieases: https://www.thelancet.com/journals/lan…

    R 1 1

  2. transcriptomics-bulk transcriptomics-bulk Public

    Jackie's bulk RNA-seq workflow

    Shell

  3. virus-amplicon virus-amplicon Public

    Processing data from virus genome amplicon sequencing

    Shell 1 1

  4. virus-shotgun virus-shotgun Public

    Characterize virus stocks

    Shell 2

  5. snv-clustering snv-clustering Public

    Clustering samples via pairwise comparison of SNV sets

    R

  6. athletic-cluster athletic-cluster Public

    Bioinformatic methods for iScience paper "Understanding SARS-CoV-2 transmission: Linking traditional contact tracing with genomic surveillance of a SARS-CoV-2 student cluster on a large urban campus"

    Python

Repositories

Showing 8 of 8 repositories
  • virus-shotgun Public

    Characterize virus stocks

    neidl-connor-lab/virus-shotgun’s past year of commit activity
    Shell 2 0 0 0 Updated Mar 6, 2024
  • virus-amplicon Public

    Processing data from virus genome amplicon sequencing

    neidl-connor-lab/virus-amplicon’s past year of commit activity
    Shell 1 1 0 0 Updated Mar 6, 2024
  • snv-clustering Public

    Clustering samples via pairwise comparison of SNV sets

    neidl-connor-lab/snv-clustering’s past year of commit activity
    R 0 0 0 0 Updated Aug 8, 2023
  • lasvShiny Public

    This Rshiny app allows users to explore protein multiplex data from Lassa fever patients in Nigeria. Main findings published in The Lancet Infectious Dieases: https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(20)30737-4/fulltext

    neidl-connor-lab/lasvShiny’s past year of commit activity
    R 1 1 0 0 Updated May 11, 2023
  • alpha-spring2021 Public

    Analysis of the alpha VoC on the BU campus

    neidl-connor-lab/alpha-spring2021’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 5, 2023
  • athletic-cluster Public

    Bioinformatic methods for iScience paper "Understanding SARS-CoV-2 transmission: Linking traditional contact tracing with genomic surveillance of a SARS-CoV-2 student cluster on a large urban campus"

    neidl-connor-lab/athletic-cluster’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 13, 2023
  • transcriptomics-bulk Public

    Jackie's bulk RNA-seq workflow

    neidl-connor-lab/transcriptomics-bulk’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Sep 8, 2022
  • loop_snooper Public
    neidl-connor-lab/loop_snooper’s past year of commit activity
    0 0 0 0 Updated Aug 2, 2019

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