Data intensive biology for everyone.
Python JavaScript Mako CSS HTML Shell
Pull request Compare This branch is 3869 commits behind galaxyproject:dev.
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.ci Expand PY3 linting to include another galaxy-lib module. Apr 8, 2016
contrib Merge pull request #2109 from mvdbeek/fix_debian_init_script Apr 8, 2016
cron Check len files during download from UCSC. Nov 12, 2015
database Add tool search to workflow editor. Also standardize tool panel struc… Sep 20, 2010
doc Replace embedded Pulsar code with dependency. Mar 31, 2016
external_service_types Fixes for transferring files from external services using the http pr… Apr 14, 2011
scripts Merge branch 'release_16.04' into dev Apr 12, 2016
static Merge branch 'release_16.04' into dev Apr 14, 2016
test-data More fixes to 3.bam to make it valid stripped out secondary HD header… Feb 2, 2016
.gitignore Merge remote-tracking branch 'galaxyproject/dev' into gie-generic Apr 4, 2016
CITATION Fix typo found by @nsoranzo. Aug 25, 2015 doc tox Oct 15, 2015 add @mr-c Nov 12, 2015
LICENSE.txt Add list of contributors Jun 15, 2015
README.rst Fix create/manage db scripts to respect GALAXY_VIRTUAL_ENV. Feb 29, 2016
requirements.txt Pin release wheel verisons. pinned-requirements.txt renamed to Jan 13, 2016 Restore a line deleted by mistake. Thanks John. Feb 2, 2015 Allow setting job_conf path for functional tests. Apr 4, 2016
setup.cfg Fix all E731 "errors". Jan 14, 2016


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The latest information about Galaxy is available via

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Galaxy Quickstart

Galaxy requires Python 2.6 or 2.7. To check your python version, run:

$ python -V
Python 2.7.3

Start Galaxy:

$ sh

Once Galaxy completes startup, you should be able to view Galaxy in your browser at:


You may wish to make changes from the default configuration. This can be done in the config/galaxy.ini file. Tools can be either installed from the Tool Shed or added manually. For details please see the Galaxy wiki:

Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at:

Issues and Galaxy Development

Please see .


Interested in the next steps for Galaxy? Take a look here: