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Table of Contents
- Abaqus
- ABYSS
- ALLPATHS-LG
- Amber
- AMOS
- AmpliconNoise
- ANSYS
- ant
- ANTLR
- ANTs
- argtable
- ATLAS
- AtomEye
- Augustus
- autoconf
- automake
- BamTools
- BayeSSC
- beagle-lib
- BEAST
- binutils
- BioPerl
- Bison
- BLACS
- BLAST
- BLAT
- blender
- boost
- bowtie
- Bowtie2
- bsoft
- bwa
- bzip2
- Cantera
- cd-hit
- cdbfasta
- cegma
- CGAL
- Chapel
- clearcut
- Clustal-Omega
- clustalw
- ClustalW2
- cmake
- COLUMBUS
- consel
- coot
- cppunit
- CrystalAnalysis
- ctffind
- cube
- CUDA
- Cufflinks
- cURL
- cutadapt
- Cytoscape
- FASTASplitN
- FastTree
- FASTX-Toolkit
- ffmpeg
- FFTW
- fftw2
- fftw3
- flex
- flexpart-wrf
- freetype
- freexl
- FSL
- Full-LengtherNEXT
- GapCloser
- GATK
- Gaussian
- GCC
- gccxml
- GeFREALIGN
- geneid
- GEOS
- gerris
- gettext
- gfsview
- GHC
- GLib
- gmap
- GMP
- gmpich2
- gmpolf
- gmvapich2
- gmvolf
- gnuplot
- goalf
- GOLD
- gompi
- google-sparsehash
- goolf
- gplot
- gplots
- gromacs
- GSL
- gts
- guile
- I-TASSER
- ibm
- icc
- iccifort
- ictce
- ifort
- IGV
- IMa2
- ImageMagick
- imkl
- IMOD
- impi
- Infernal
- inputproto
- Instruct
- intel
- intel-mpi
- iomkl
- itac
- ITK
- LAMARC
- lammps
- LAPACK
- libctl
- libdrm
- libffi
- libgflags
- libglog
- libgtextutils
- libICE
- libjpeg-turbo
- libleveldb
- liblmdb
- libpciaccess
- libpng
- libreadline
- libSM
- libsnappy
- libspatialite
- libtool
- libunistring
- libX11
- libXaw
- libxcb
- libXcursor
- libxml2
- libXmu
- libXpm
- libxslt
- libXt
- Lis
- LLVM
- Lmod
- M4
- MAFFT
- MAKER
- MaSuRCA
- Mathematica
- MATLAB
- matplotlib
- mdtest
- Meep
- Mesa
- metis
- microbiomeutil
- migrate
- Migrate-n
- MLNX-OFED
- model
- mothur
- MPFR
- mpiblast
- mpich2
- MrBayes
- msbayes
- msvar
- MUMmer
- MUMPS
- muscle
- mvapich2
- Oases
- Octave
- OPARI2
- OpenBLAS
- OpenBUGS
- OpenCMISS
- OpenCV
- OpenFoam
- OpenMPI
- OpenSees
- OpenSSL
- orca
- OTF2
- ovito
- PAPI
- Paraview
- parmetis
- ParsInsert
- partitionfinder
- PCRE
- PDT
- PEAR
- Perl
- petsc
- pgi
- phenix
- PhyloBayesMPI
- PhyML
- PhymmBL
- picard
- Pillow
- pkg-config
- plink
- pplacer
- PROJ4
- protobuf
- PyCogent
- PyNAST
- Python
- R
- RAxML
- RDP-Classifier
- rdp_classifier
- RECON
- Relion
- RepeatMasker
- RepeatScout
- ResMap
- RMBlast
- rna-star
- Rosetta
- RSEM
- rtax
- Ruby
- Sage
- samblaster
- samtools
- SAS
- ScaLAPACK
- Scalasca
- scikit-image
- Scipio
- SCons
- Score-P
- SCOTCH
- SDL
- seq-gen
- SeqPrep
- SGA
- SNAP
- snpEff
- SOAPdenovo
- SOAPdenovo2
- SOAPec
- SourceTracker
- SPIDER
- Spring
- SQLite
- sratoolkit
- sspace-basic
- supermagic
- SWIG
- Szip