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Compartment Mechanism-Vectorization #989

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Vectorizing the step-function calculations of all instances of a given mechanism-type in all compartments within a neuron.
Work in progress.

LeanderEwert and others added 26 commits April 2, 2024 15:37
Merge branch 'LeanderEwert_vectorization' into implicit_euler
…vided with a unit anymore."

This reverts commit b6cb9d8
Switch integration algorithm to implicit Euler
…erEwert_vectorization

# Conflicts:
#	models/neurons/aeif_cond_alpha_neuron.nestml
#	models/neurons/hh_psc_alpha_neuron.nestml
#	models/neurons/iaf_cond_alpha_neuron.nestml
#	models/neurons/iaf_cond_beta_neuron.nestml
#	models/neurons/iaf_cond_exp_neuron.nestml
#	models/neurons/iaf_psc_exp.nestml
#	models/neurons/terub_gpe_neuron.nestml
#	models/neurons/terub_stn_neuron.nestml
#	models/neurons/traub_psc_alpha_neuron.nestml
#	models/neurons/wb_cond_exp_neuron.nestml
#	pynestml/codegeneration/nest_compartmental_code_generator.py
#	pynestml/utils/mechs_info_enricher.py
#	pynestml/utils/messages.py
#	setup.py
#	tests/nest_compartmental_tests/compartmental_model_test.py
#	tests/valid/CoCoOutputPortDefinedIfEmitCall.nestml
@LeanderEwert LeanderEwert changed the title Compartment Mechanism-Vectorization [WIP] Compartment Mechanism-Vectorization Jun 19, 2024
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5 participants