ai_genomics

Setup

Meet the data science cookiecutter requirements, in brief:
- Install: git-crypt, direnv, and conda
- Have a Nesta AWS account configured with awscli
Run make install to configure the development environment:
- Setup the conda environment
- Configure pre-commit
- Configure metaflow to use AWS

Download spaCy's en_core_web_sm 3.1.0 pipeline:

pip install https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.1.0/en_core_web_sm-3.1.0.tar.gz

Name		Name	Last commit message	Last commit date
Latest commit History 288 Commits
.cookiecutter		.cookiecutter
.github		.github
ai_genomics		ai_genomics
docs		docs
inputs/data		inputs/data
outputs		outputs
.envrc		.envrc
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
environment.yaml		environment.yaml
jupytext.toml		jupytext.toml
requirements.txt		requirements.txt
requirements_dev.txt		requirements_dev.txt
setup.cfg		setup.cfg
setup.py		setup.py