fix typo #102
Workflow file for this run
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| # This workflow uses actions that are not certified by GitHub. | ||
| # They are provided by a third-party and are governed by | ||
| # separate terms of service, privacy policy, and support | ||
| # documentation. | ||
| # | ||
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | ||
| # additional example workflows available for the R community. | ||
| name: netZooM | ||
| env: | ||
| ACTIONS_ALLOW_UNSECURE_COMMANDS: 'true' | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| - devel | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| - devel | ||
| jobs: | ||
| build: | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| matrix: | ||
| os: [ubuntu-latest] | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| token: ${{ secrets.GITHUB_TOKEN }} | ||
| - name: Set up MATLAB | ||
| uses: matlab-actions/setup-matlab@v1 | ||
| options: | ||
| - release: R2020a | ||
| - name: install bedtools ubuntu | ||
| if: matrix.os == 'ubuntu-latest' | ||
| run: | | ||
| wget https://github.com/arq5x/bedtools2/releases/download/v2.29.0/bedtools-2.29.0.tar.gz | ||
| tar -zxvf bedtools-2.29.0.tar.gz | ||
| cd bedtools2 | ||
| make | ||
| ls | ||
| pwd | ||
| cd .. | ||
| - name: install bedtools macos | ||
| if: matrix.os == 'macos-latest' | ||
| run: | | ||
| wget https://github.com/marouenbg/bedtools2/archive/refs/heads/master.zip | ||
| unzip master.zip | ||
| mv bedtools2-master bedtools2 | ||
| cd bedtools2 | ||
| make | ||
| ls | ||
| pwd | ||
| cd .. | ||
| - name: Run tests and generate artifacts | ||
| run: | | ||
| ls && pwd | ||
| cd .. | ||
| git clone https://github.com/MOxUnit/MOxUnit.git # Install MOxUnit, which adds itself to the startup path | ||
| git clone https://github.com/MOcov/MOcov.git | ||
| pwd | ||
| ls | ||
| shell: bash | ||
| - name: run actual tests | ||
| run: | | ||
| matlab -batch 'cd ../MOcov;addpath(genpath(pwd));cd ../netZooM;addpath(genpath("/home/runner/work/netZooM/"));back=cd("../MOxUnit/MOxUnit/"); moxunit_set_path(); cd(back); pwd; ls; moxunit_runtests tests -recursive -verbose -junit_xml_file testresults.xml -with_coverage -cover netZooM -cover_exclude tests -cover_xml_file coverage.xml -cover_json_file coveralls.json); exit(double(~ans))' | ||
| - name: report coverage | ||
| run: | | ||
| bash <(curl -s https://codecov.io/bash) | ||
