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Make sample tracks available online #43

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leylaabbasova opened this issue Sep 28, 2022 · 2 comments
Open

Make sample tracks available online #43

leylaabbasova opened this issue Sep 28, 2022 · 2 comments
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@leylaabbasova
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@bschilder
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Implemented via our new private cloud server:

http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl=https://webserver-schilder-ukdri.dsi.ic.ac.uk/cutntag_benchmarkingtrackhub/hub.txt

Been told by @leylaabbasova and @NathanSkene that the default UCSC GB tracks just show up instead though.

@bschilder
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bschilder commented Nov 1, 2022

Had to do some extra steps to create a Saved Session on UCSC and generate a persistent link that is accessible to everyone:
http://genome-euro.ucsc.edu/s/bschilder/cutntag_benchmarking

Additional requested features from @nottalexi and @SarahMarzi and myself:

  • "Find better labels for ENCODE and Henikoff data. I’m guessing the one with the ENCFF… extension is ENCODE, but it’s not directly clear. And I can’t tell which ones are CUT&Tag vs CUT&RUN from the Henikoff samples."
  • "lower the max vertical viewing scale to 50 or so."
  • "lower the track height. I use 45."
  • Make pretty colors

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