Updated workflows to new R 4.3 and corresponding Bioconductor release

neuroimaginador · Apr 24, 2023 · 010acb4 · 010acb4
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commit 010acb4
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Showing 4 changed files with 7 additions and 7 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -26,7 +26,7 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release', bioc: '3.15'}
+          - {os: macOS-latest,   r: 'release', bioc: '3.17'}
           - {os: windows-latest, r: 'release', bioc: '3.17'}
           # - {os: ubuntu-16.04, bioc: '3.13', cont: "bioconductor/bioconductor_docker:devel",   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest", http-user-agent: "R/4.0.0 (ubuntu-16.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
           - {os: ubuntu-20.04,   r: 'release', bioc: '3.17', rspm: "https://packagemanager.rstudio.com/all/__linux__/bionic/latest"}
@@ -39,7 +39,7 @@ jobs:
     steps:
       - uses: actions/checkout@master
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -14,14 +14,14 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release', bioc: '3.15'}
+          - {os: macOS-latest,   r: 'release', bioc: '3.17'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - uses: actions/checkout@master
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
 
       - uses: r-lib/actions/setup-pandoc@v1
 

diff --git a/.github/workflows/pr-commands.yaml b/.github/workflows/pr-commands.yaml
@@ -14,7 +14,7 @@ jobs:
       - uses: r-lib/actions/pr-fetch@v1
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
       - name: Install dependencies
         run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)'
       - name: Document

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -18,14 +18,14 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release', bioc: '3.15'}
+          - {os: macOS-latest,   r: 'release', bioc: '3.17'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - uses: actions/checkout@master
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
 
       - uses: r-lib/actions/setup-pandoc@v1