Tidy up the docs in terms of order and naming

neuroinfo-os · Oct 31, 2018 · 54c191e · 54c191e
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diff --git a/docs/1.Background.rst b/docs/1.Background.rst
diff --git a/docs/literature_summary.rst → docs/2.literature_summary.rst b/docs/literature_summary.rst → docs/2.literature_summary.rst
@@ -6,20 +6,25 @@ Literature summary
 :cite:`Tishby2000`
 
 
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 2. Deep learning and the information bottleneck principle (Tishby 2015)
 -----------------------------------------------------------------------
 :cite:`Tishby2015`
 
 
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 3. Opening the black box of deep neural networks via information (Tishby 2017)
 ------------------------------------------------------------------------------
 :cite:`Schwartz-ziv2017`
 
 
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 4. On the information bottleneck theory of deep learning (Saxe 2018)
 --------------------------------------------------------------------
 :cite:`Saxe2018`
 
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 4.1 Key points of the paper
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
@@ -81,6 +86,7 @@ Literature summary
 `Click here to open presentation as PDF document. <_static/on_the_information_bottleneck_theory_presentation.pdf>`_
 
 
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 5. SVCCA: singular vector canonical correlation analysis
 --------------------------------------------------------
 :cite:`Raghu2017`
@@ -165,4 +171,5 @@ Literature summary
 - Moreover, SVCCA captures the semantics of different classes, with similar classes having similar sensitivities, and vice versa.
 
 
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 .. bibliography:: references.bib
diff --git a/docs/3.experiments/.DS_Store b/docs/3.experiments/.DS_Store
diff --git a/.../experiments/1.explanation_of_cohorts.rst → ....experiments/1.explanation_of_cohorts.rst b/.../experiments/1.explanation_of_cohorts.rst → ....experiments/1.explanation_of_cohorts.rst
diff --git a/docs/experiments/10.initial_bias.ipynb → docs/3.experiments/10.initial_bias.ipynb b/docs/experiments/10.initial_bias.ipynb → docs/3.experiments/10.initial_bias.ipynb
diff --git a/docs/experiments/2.minimal_model.ipynb → docs/3.experiments/2.minimal_model.ipynb b/docs/experiments/2.minimal_model.ipynb → docs/3.experiments/2.minimal_model.ipynb
diff --git a/...iments/3.cohorte3_full_mi_infoplane.ipynb → ...iments/3.cohorte3_full_mi_infoplane.ipynb b/...iments/3.cohorte3_full_mi_infoplane.ipynb → ...iments/3.cohorte3_full_mi_infoplane.ipynb
diff --git a/...orte_activation_functions_infoplane.ipynb → ...orte_activation_functions_infoplane.ipynb b/...orte_activation_functions_infoplane.ipynb → ...orte_activation_functions_infoplane.ipynb
diff --git a/...ents/6.weighted_binning_exploration.ipynb → ...ents/6.weighted_binning_exploration.ipynb b/...ents/6.weighted_binning_exploration.ipynb → ...ents/6.weighted_binning_exploration.ipynb
diff --git a/...xperiments/7.weight_renormalization.ipynb → ...xperiments/7.weight_renormalization.ipynb b/...xperiments/7.weight_renormalization.ipynb → ...xperiments/7.weight_renormalization.ipynb
diff --git a/docs/experiments/8.data_set.ipynb → docs/3.experiments/8.data_set.ipynb b/docs/experiments/8.data_set.ipynb → docs/3.experiments/8.data_set.ipynb
diff --git a/docs/experiments/9.analyze_entropy.ipynb → docs/3.experiments/9.analyze_entropy.ipynb b/docs/experiments/9.analyze_entropy.ipynb → docs/3.experiments/9.analyze_entropy.ipynb
diff --git a/docs/experiments/index.rst → docs/3.experiments/index.rst b/docs/experiments/index.rst → docs/3.experiments/index.rst
diff --git a/docs/contributing.rst → docs/4.contributing.rst b/docs/contributing.rst → docs/4.contributing.rst
diff --git a/docs/user_guide.rst → docs/5.user_guide.rst b/docs/user_guide.rst → docs/5.user_guide.rst
diff --git a/docs/glossary.rst → docs/6.glossary.rst b/docs/glossary.rst → docs/6.glossary.rst
diff --git a/docs/api_doc/deep_bottleneck.callbacks.rst → docs/7.api_doc/deep_bottleneck.callbacks.rst b/docs/api_doc/deep_bottleneck.callbacks.rst → docs/7.api_doc/deep_bottleneck.callbacks.rst
diff --git a/docs/api_doc/deep_bottleneck.datasets.rst → docs/7.api_doc/deep_bottleneck.datasets.rst b/docs/api_doc/deep_bottleneck.datasets.rst → docs/7.api_doc/deep_bottleneck.datasets.rst
diff --git a/docs/api_doc/deep_bottleneck.eval_tools.rst → .../7.api_doc/deep_bottleneck.eval_tools.rst b/docs/api_doc/deep_bottleneck.eval_tools.rst → .../7.api_doc/deep_bottleneck.eval_tools.rst
diff --git a/.../api_doc/deep_bottleneck.mi_estimator.rst → ....api_doc/deep_bottleneck.mi_estimator.rst b/.../api_doc/deep_bottleneck.mi_estimator.rst → ....api_doc/deep_bottleneck.mi_estimator.rst
diff --git a/docs/api_doc/deep_bottleneck.models.rst → docs/7.api_doc/deep_bottleneck.models.rst b/docs/api_doc/deep_bottleneck.models.rst → docs/7.api_doc/deep_bottleneck.models.rst
diff --git a/docs/api_doc/deep_bottleneck.plotter.rst → docs/7.api_doc/deep_bottleneck.plotter.rst b/docs/api_doc/deep_bottleneck.plotter.rst → docs/7.api_doc/deep_bottleneck.plotter.rst
diff --git a/docs/api_doc/deep_bottleneck.rst → docs/7.api_doc/deep_bottleneck.rst b/docs/api_doc/deep_bottleneck.rst → docs/7.api_doc/deep_bottleneck.rst
diff --git a/docs/api_doc/modules.rst → docs/7.api_doc/modules.rst b/docs/api_doc/modules.rst → docs/7.api_doc/modules.rst
diff --git a/docs/BigPicture.rst b/docs/BigPicture.rst
diff --git a/docs/literature.rst b/docs/literature.rst