Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

napari widget for loading and visualising pose tracks #112

Draft
wants to merge 28 commits into
base: main
Choose a base branch
from
Draft

napari widget for loading and visualising pose tracks #112

wants to merge 28 commits into from

Commits on May 7, 2024

  1. added napari-related dependencies

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    630f65f View commit details
    Browse the repository at this point in the history

  2. [WIP] first draft of napari reader for pose tracks

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    a95f4ac View commit details
    Browse the repository at this point in the history

  3. changed napari-related dependencies

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    51851d6 View commit details
    Browse the repository at this point in the history

  4. WIP converting reader plugin to widget

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    d38a3cf View commit details
    Browse the repository at this point in the history

  5. converted reader plugin to widget

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    3de9980 View commit details
    Browse the repository at this point in the history

  6. remove some redundant code

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    9929d67 View commit details
    Browse the repository at this point in the history

  7. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci @niksirbi
    pre-commit-ci[bot] authored and niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    c7b3928 View commit details
    Browse the repository at this point in the history

  8. constrained brainglobe-utils to >= 0.4

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    a15a75d View commit details
    Browse the repository at this point in the history

  9. fixed color ordering in points and tracks colormaps

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    8f0355b View commit details
    Browse the repository at this point in the history

  10. refactored napari layer styles into dataclasses

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    3878062 View commit details
    Browse the repository at this point in the history

  11. use the generic from_file function to load the pose data

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    78e7446 View commit details
    Browse the repository at this point in the history

  12. simplify the way napari dependencies are included in dev extras

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    bf64375 View commit details
    Browse the repository at this point in the history

  13. refactored ds_to_napari_tracks function

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    cd74549 View commit details
    Browse the repository at this point in the history

  14. fixed typo

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    00dd611 View commit details
    Browse the repository at this point in the history

  15. wrote test for ds_to_napari_tracks

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    04d73b5 View commit details
    Browse the repository at this point in the history

  16. test replacement of NaNs in confidence

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    6816e17 View commit details
    Browse the repository at this point in the history

  17. WIP smoke test for napari widget

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    f89a2ea View commit details
    Browse the repository at this point in the history

  18. refactor and test function for converting pd column to categorical codes

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    d430b64 View commit details
    Browse the repository at this point in the history

  19. set napari playback speed based on fps

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    c691fcb View commit details
    Browse the repository at this point in the history

  20. rename widgets

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    43fc9a0 View commit details
    Browse the repository at this point in the history

  21. pose file is loaded upon "Load" button click

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    e4a51af View commit details
    Browse the repository at this point in the history

  22. test instantiation of meta and loader widgets

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    ac31448 View commit details
    Browse the repository at this point in the history

  23. add teardown to metawidget fixture

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    583a9f0 View commit details
    Browse the repository at this point in the history

  24. Revert "add teardown to metawidget fixture" 

    This reverts commit 242a92a.
    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    ccb7f1d View commit details
    Browse the repository at this point in the history

  25. add workflow step to enable qt testing on linux

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    b647fb3 View commit details
    Browse the repository at this point in the history

  26. use make_napari_viewer_proxy

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    c726d9a View commit details
    Browse the repository at this point in the history

  27. updated tox config to enable headless qt tests on ubuntu

    @niksirbi
    niksirbi committed May 7, 2024
    Configuration menu
    Copy the full SHA
    21c68f5 View commit details
    Browse the repository at this point in the history

  28. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed May 7, 2024
    Configuration menu
    Copy the full SHA
    f438744 View commit details
    Browse the repository at this point in the history