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aln input_vars (#243)
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* add "ext_inh_current" and "ext_inh_rate" to input_vars of aln

* Update test_autochunk.py
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lenasal committed Sep 7, 2023
1 parent 8316e6e commit f940967
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Showing 2 changed files with 7 additions and 5 deletions.
2 changes: 1 addition & 1 deletion neurolib/models/aln/model.py
Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ class ALNModel(Model):
]
output_vars = ["rates_exc", "rates_inh", "IA"]
default_output = "rates_exc"
input_vars = ["ext_exc_current", "ext_exc_rate"]
input_vars = ["ext_exc_current", "ext_inh_current", "ext_exc_rate", "ext_inh_rate"]
default_input = "ext_exc_rate"

def __init__(self, params=None, Cmat=None, Dmat=None, lookupTableFileName=None, seed=None):
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10 changes: 6 additions & 4 deletions tests/test_autochunk.py
Original file line number Diff line number Diff line change
Expand Up @@ -86,15 +86,17 @@ def test_onstep_input_autochunk(self):
ous = np.zeros((model.params["N"], duration_dt))

# prepare input
inp_x = np.zeros((model.params["N"], duration_dt))
inp_y = np.zeros((model.params["N"], duration_dt))
inp_exc_current = np.zeros((model.params["N"], duration_dt))
inp_inh_current = np.zeros((model.params["N"], duration_dt))
inp_exc_rate = np.zeros((model.params["N"], duration_dt))
inp_inh_rate = np.zeros((model.params["N"], duration_dt))

for n in range(model.params["N"]):
fr = 1
inp_x[n, :] = np.sin(np.linspace(0, fr * 2 * np.pi, duration_dt)) * 0.1
inp_exc_current[n, :] = np.sin(np.linspace(0, fr * 2 * np.pi, duration_dt)) * 0.1

for i in range(duration_dt):
inputs = [inp_x[:, i], inp_y[:, i]]
inputs = [inp_exc_current[:, i], inp_inh_current[:, i], inp_exc_rate[:, i], inp_inh_rate[:, i]]
model.autochunk(inputs=inputs, append_outputs=True)


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