Below are colab links to the jupyter notebooks contained in this course.
You can click the colab badges to open and interact with the notebooks in the google colab environment. Colab provides the ability to copy the notebook to your google drive if you wish to save your work or play with the notebooks offline.
Students will work with these notebooks by cloning the repository into their Google Drive (associated with their @wesleyan.edu email accounts) and then opening the colab environment from their google drive.
Topic: Introduction to working with Jupyter Notebooks in the Classroom.
1) Obtained from: Ashley Juavinett (https://github.com/ajuavinett)
Original available to clone from: https://github.com/ajuavinett/CellTypesLesson.git
Notebook:
2) Obtained from: https://github.com/evettita/FisherLuDAlessandroWilson_AnalysisCode
This lesson has been developed by members of the teaching team at the Harvard Chan Bioinformatics Core (HBC)
Notebook:
Other Handy Resources:
https://github.com/jakevdp/WhirlwindTourOfPython/
https://swcarpentry.github.io/python-novice-inflammation/02-numpy/index.html
https://towardsdatascience.com/google-drive-google-colab-github-dont-just-read-do-it-5554d5824228
Topic: Genetic Basis of Behavior -- Parental care.
Reading: The genetic basis of parental care evolution in monogamous mice. Andres Bendesky, Young-Mi Kwon, Jean-Marc Lassance, Caitlin L. Lewarch, Shenqin Yao, Brant K. Peterson, Meng Xiao He, Catherine Dulac & Hopi E. Hoekstra. Nature (2017)
Available at: https://www.nature.com/articles/nature22074
Notebook:
Topic: Hormonal Modulation of Behavior -- Parental care.
Reading: Oxytocin enables maternal behaviour by balancing cortical inhibition. Bianca J. Marlin, Mariela Mitre, James A. D’amour, Moses V. Chao & Robert C. Froemke. Nature (2015)
Available at: https://www.nature.com/articles/nature14402
Notebook:
Topic: Communication -- Interactions and Turn Taking -- Neotropical Singing Mice and Zebra Finches.
Reading 1: Motor cortical control of vocal interaction in neotropical singing mice. Daniel E. Okobi Jr., Arkarup Banerjee, Andrew M. M. Matheson, Steven M. Phelps, Michael A. Long. Science (2019)
Available at: https://science.sciencemag.org/content/363/6430/983/tab-figures-data
Reading 2: Inhibition within a premotor circuit controls the timing of vocal turn-taking in zebra finches. Jonathan I. Benichov & Daniela Vallentin. Nature (2020)
Available at: https://www.nature.com/articles/s41467-019-13938-0
Notebook:
Topic: Communication -- Vocal Turn Taking -- Interactive Psychophysical Experiment.
Notebook: