AxonSeg: Axon Segmentation Toolbox
Segment axon and myelin from microscopy data. Written in Matlab (R2014a).
ANNOUNCEMENT: AxonSeg software now has a little brother: AxonDeepSeg, which is based on deep-learning and provides better performance. We encourage you to switch to AxonDeepSeg
Please refer to issue #51 to solve installation error on MAC OS Sierra and later
1 - Download the latest release of Axon Segmentation Toolbox : https://github.com/neuropoly/axonseg/releases
2 - Add the folder code to your Matlab path
3 - Run the script AxonSeg
Help & Support
For help or support related to AxonSeg (bugs, trouble with installation, feedback), please add an issue at https://github.com/neuropoly/axonseg/issues.
Link to video demo (note: SegmentationGUI.m was renamed AxonSeg.m): https://github.com/neuropoly/axonseg/releases/download/v2.1/Axon_Segmentation_GUI_Quick_Overview.mp4.
After installation, run the
as_tutorial.m script line by line to get a better understanding of AxonSeg.
Segment any type of histology
Reference: Zaimi A, Duval T, Gasecka A, Côté D, Stikov N and Cohen-Adad J (2016). AxonSeg: open source software for axon and myelin segmentation and morphometric analysis. Front. Neuroinform. 10:37. doi: 10.3389/fninf.2016.00037
Copyright (c) 2017 NeuroPoly (Polytechnique Montreal) and DCClab (Université Laval)