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.travis.yml
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# vim ft=yaml
# travis-ci.org definition for MOxUnit build (based on CoSMoMVPA,
# which is based on PyMVPA, which is based on nipype configuration,
# which in turn was based on nipy)
#
# We pretend to be java because we need GNU Octave which is not
# available (as of April 2015)
language: java
cache:
apt: true # Not working for public repos :(
directories:
# Following directories will be generated
- $HOME/octave
#- $HOME/build/neuropoly/qMRLab/osfData
env:
global:
- OCTAVE=octave
deploy:
provider: s3
# access_key_id: "YOUR AWS ACCESS KEY"
secure: "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"
bucket: "qmrlab"
before_install:
# to prevent IPv6 being used for APT
- sudo bash -c "echo 'Acquire::ForceIPv4 \"true\";' > /etc/apt/apt.conf.d/99force-ipv4"
- travis_retry sudo apt-get -y -qq update
- travis_retry sudo apt-get install -y -qq software-properties-common python-software-properties
- travis_retry sudo apt-add-repository -y ppa:octave/stable
- travis_retry sudo apt-get -y -qq update
- travis_retry sudo apt-get install -y wget
# get Octave 4,0
- travis_retry sudo apt-get -y -qq install octave liboctave-dev octave-pkg-dev
# Please comment in following section if you need to update packages or add a new one
# If following section is going to be commented in, please set cacheState to false in startup.m
# --------------
#- travis_retry wget -O /home/travis/octave/OctavePackages.zip https://osf.io/t465n/download
#- unzip /home/travis/octave/OctavePackages.zip
- travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/struct-1.0.14.tar.gz -P /home/travis/octave
- travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/optim-1.5.2.tar.gz -P /home/travis/octave
- travis_retry wget https://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/io-2.4.10.tar.gz -P /home/travis/octave
- travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/statistics-1.3.0.tar.gz -P /home/travis/octave
- travis_retry wget http://sourceforge.net/projects/octave/files/Octave%20Forge%20Packages/Individual%20Package%20Releases/image-2.6.1.tar.gz -P /home/travis/octave
# --------------
- make -C External/MOcov install
# set up awscli packages
- pip install --user awscli
- mkdir -p ~/$TRAVIS_BUILD_NUMBER
- aws s3 sync s3://travis-build-stages-shared-storage-test/$TRAVIS_BUILD_NUMBER ~/$TRAVIS_BUILD_NUMBER
jobs:
include:
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/quickMoxTests');res=moxunit_runtests('-recursive','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_quickMoxTests.json');exit(~res);"; mv coverage_quickMoxTests.json ~/$TRAVIS_BUILD_NUMBER/coverage_quickMoxTests.json
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('BatchExample_test.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_BatchExample.json');exit(~res);"; mv coverage_BatchExample.json ~/$TRAVIS_BUILD_NUMBER/coverage_BatchExample.json
# Pay attention to the indentation! Make them look like -stage and script lines above.
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_charmed.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_SimTest_charmed.json');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_dti.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_SimTest_dti.json');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_noddi.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_SimTest_noddi.json');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_qmt_bssfp.m');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_qmt_sirfse.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_SimTest_qmt_sirfse.json');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_qmt_spgr.m');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_inversion_recovery.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_SimTest_inversion_recovery.json');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_vfa_t1.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_SimTest_vfa_t1.json');exit(~res);"
- stage: Test
script: travis_wait 30 octave --no-gui --eval "bootstrapTest;cd('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible');res=moxunit_runtests('SimTest_mwf.m','-with_coverage','-cover','/home/travis/build/neuropoly/qMRLab/src','-cover_json_file','coverage_SimTest_mwf.json');exit(~res);"
- stage: CombineReports
script: mv ~/$TRAVIS_BUILD_NUMBER/*.json /home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/;octave --no-gui --eval "cd('/home/travis/build/neuropoly/qMRLab/');startup;mocov_combine('/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/','coverage_combined.json')"; mv /home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/coverage_combined.json ~/$TRAVIS_BUILD_NUMBER/coverage_combined.json
- stage: Coveralls
script: mv ~/$TRAVIS_BUILD_NUMBER/coverage_combined.json /home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/coverage_combined.json;curl --verbose -F json_file=@/home/travis/build/neuropoly/qMRLab/Test/MoxUnitCompatible/coverage_combined.json https://coveralls.io/api/v1/jobs