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Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
Python Matlab C++ Shell C Java Other
Latest commit cab31ad @tanguyduval tanguyduval Merge branch 'master' of https://github.com/neuropoly/spinalcordtoolbox
# By Julien Cohen-Adad (46) and others
# Via Julien Cohen-Adad (13) and others
* 'master' of https://github.com/neuropoly/spinalcordtoolbox: (61 commits)
  updated CHANGES
  REF: compute_snr: small changes and renamed function
  NEW: function to compute SNR in diffusion-weighted images in a given ROI according to different methods (Dietrich 2007)
  updated CHANGES
  updated CHANGES.md
  updated batch_processing
  OPT: straighten_spinalcord: added "square" labels (8 more)
  OPT: straighten_spinalcord: fixed temp output in float --> unit32
  updated batch_processing
  REF: straighten_spinalcord: removed sympy dependence
  REF: register_to_template: removed flag cpu-nb
  OPT: msct_smooth: new function to compute 2D derivatives (used by straighten_spinalcord)
  REF: straighten_spinalcord: removed flag -cpu-nb (don't need it anymore)
  BUG: straighten_spinalcord: major refactoring. Now using analytical solution for computing labels (issue #722).
  REF: straighten_spinalcord: added output for helping with debugging
  BUG: register_to_template: fixed typo that prevented to set flag -cpu-nb
  BUG: batch_processing: added flag "-nodisplay" to avoid launching fslview. This seems to solve issue #722
  removed /patches folder
  updated CHANGES
  BUG: dmri_separater_b0_and_dwi: fixed bug for finding bval file
  ...

README.md

Spinal Cord Toolbox Build Status Project Stats

Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

References

Spinal Cord Toolbox

Segmentation (Propseg)

Template and Atlas

Registration

License

The MIT License (MIT)

Copyright (c) 2014 École Polytechnique, Université de Montréal

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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