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update example query after gh #31
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jeromedockes committed Jun 8, 2023
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6 changes: 3 additions & 3 deletions docs/example_queries/README.md
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of journals related to psychology, cognitive science or neuroscience, or
referencing fMRI, VBM or "neural correlates". This is very roughly similar to
what was used to create the NeuroQuery dataset and is meant to produce many
articles that contain stereotactic coordinates; as of May 2022 it should yield
over 9,000 articles with coordinates.
- `pmcids.txt`: contains around 9,000 PMCIDS for which stereotactic coordinates
articles that contain stereotactic coordinates; as of June 2023 it should yield
over 10,000 articles with coordinates.
- `pmcids.txt`: contains around 11,000 PMCIDS for which stereotactic coordinates
were found. It was built as the union of PMCIDs for articles in NeuroQuery,
NeuroSynth, and the results of `journal_list_fmri_vbm.txt` that contain
stereotactic coordinates (`pubget --articles_with_coords_only`). It can be used
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2 changes: 1 addition & 1 deletion docs/example_queries/journal_list_fmri_vbm.txt
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("Aging clinical and experimental research"[Journal]) OR ("Alzheimer's research & therapy"[Journal]) OR ("Behavioral and brain functions : BBF"[Journal]) OR ("Behavioral and cognitive neuroscience reviews"[Journal]) OR ("Behavioural brain research"[Journal]) OR ("Biological psychiatry"[Journal]) OR ("Biological psychology"[Journal]) OR ("Brain : a journal of neurology"[Journal]) OR ("Brain and behavior"[Journal]) OR ("Brain and cognition"[Journal]) OR ("Brain and language"[Journal]) OR ("Brain connectivity"[Journal]) OR ("Brain imaging and behavior"[Journal]) OR ("Brain research"[Journal]) OR ("Brain research. Brain research reviews"[Journal]) OR ("Brain research. Cognitive brain research"[Journal]) OR ("Brain structure & function"[Journal]) OR ("Brain topography"[Journal]) OR ("Cerebral cortex (New York, N.Y. : 1991)"[Journal]) OR ("Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology"[Journal]) OR ("Cognition"[Journal]) OR ("Cognitive neuropsychiatry"[Journal]) OR ("Cognitive neuropsychology"[Journal]) OR ("Cognitive neuroscience"[Journal]) OR ("Cognitive, affective & behavioral neuroscience"[Journal]) OR ("Cortex; a journal devoted to the study of the nervous system and behavior"[Journal]) OR ("Dementia and geriatric cognitive disorders"[Journal]) OR ("Developmental cognitive neuroscience"[Journal]) OR ("Epilepsia"[Journal]) OR ("European archives of psychiatry and clinical neuroscience"[Journal]) OR ("European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology"[Journal]) OR ("Experimental brain research"[Journal]) OR ("Frontiers in behavioral neuroscience"[Journal]) OR ("Frontiers in human neuroscience"[Journal]) OR ("Frontiers in integrative neuroscience"[Journal]) OR ("Frontiers in neuroscience"[Journal]) OR ("Frontiers in systems neuroscience"[Journal]) OR ("Human brain mapping"[Journal]) OR ("International journal of psychophysiology : official journal of the International Organization of Psychophysiology"[Journal]) OR ("Journal of affective disorders"[Journal]) OR ("Journal of autism and developmental disorders"[Journal]) OR ("Journal of cognitive neuroscience"[Journal]) OR ("Journal of neurolinguistics"[Journal]) OR ("Journal of neurology, neurosurgery, and psychiatry"[Journal]) OR ("Journal of neurophysiology"[Journal]) OR ("Journal of neuropsychology"[Journal]) OR ("Journal of neuroscience methods"[Journal]) OR ("Journal of neuroscience research"[Journal]) OR ("Journal of psychiatry & neuroscience : JPN"[Journal]) OR ("Language, cognition and neuroscience"[Journal]) OR ("Nature neuroscience"[Journal]) OR ("NeuroImage"[Journal]) OR ("NeuroImage. Clinical"[Journal]) OR ("Neurobiology of aging"[Journal]) OR ("Neurobiology of learning and memory"[Journal]) OR ("Neuron"[Journal]) OR ("Neurophysiologie clinique = Clinical neurophysiology"[Journal]) OR ("Neuropsychologia"[Journal]) OR ("Neuropsychologia"[Journal]) OR ("Neuroscience letters"[Journal]) OR ("Neuroscience research"[Journal]) OR ("PLoS computational biology"[Journal]) OR ("Pain"[Journal]) OR ("PloS one"[Journal]) OR ("Proceedings of the National Academy of Sciences of the United States of America"[Journal]) OR ("Progress in brain research"[Journal]) OR ("Psychiatry research"[Journal]) OR ("Psychopharmacology"[Journal]) OR ("Schizophrenia bulletin"[Journal]) OR ("Schizophrenia research"[Journal]) OR ("Social cognitive and affective neuroscience"[Journal]) OR ("Stroke"[Journal]) OR ("The European journal of neuroscience"[Journal]) OR ("The Journal of neuroscience : the official journal of the Society for Neuroscience"[Journal]) OR ("Topics in cognitive science"[Journal]) OR ("Trends in cognitive sciences"[Journal]) OR ("Vision research"[Journal]) OR ("Visual cognition"[Journal]) OR (fMRI[Abstract]) OR "vbm" OR "neural correlates"
("Aging clinical and experimental research"[Journal]) OR ("Alzheimer's research & therapy"[Journal]) OR ("Behavioral and brain functions : BBF"[Journal]) OR ("Behavioral and cognitive neuroscience reviews"[Journal]) OR ("Behavioural brain research"[Journal]) OR ("Biological psychiatry"[Journal]) OR ("Biological psychology"[Journal]) OR ("Brain : a journal of neurology"[Journal]) OR ("Brain and behavior"[Journal]) OR ("Brain and cognition"[Journal]) OR ("Brain and language"[Journal]) OR ("Brain connectivity"[Journal]) OR ("Brain imaging and behavior"[Journal]) OR ("Brain research"[Journal]) OR ("Brain research. Brain research reviews"[Journal]) OR ("Brain research. Cognitive brain research"[Journal]) OR ("Brain structure & function"[Journal]) OR ("Brain topography"[Journal]) OR ("Cerebral cortex (New York, N.Y. : 1991)"[Journal]) OR ("Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology"[Journal]) OR ("Cognition"[Journal]) OR ("Cognitive neuropsychiatry"[Journal]) OR ("Cognitive neuropsychology"[Journal]) OR ("Cognitive neuroscience"[Journal]) OR ("Cognitive, affective & behavioral neuroscience"[Journal]) OR ("Cortex; a journal devoted to the study of the nervous system and behavior"[Journal]) OR ("Dementia and geriatric cognitive disorders"[Journal]) OR ("Developmental cognitive neuroscience"[Journal]) OR ("Epilepsia"[Journal]) OR ("European archives of psychiatry and clinical neuroscience"[Journal]) OR ("European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology"[Journal]) OR ("Experimental brain research"[Journal]) OR ("Frontiers in behavioral neuroscience"[Journal]) OR ("Frontiers in human neuroscience"[Journal]) OR ("Frontiers in integrative neuroscience"[Journal]) OR ("Frontiers in neuroscience"[Journal]) OR ("Frontiers in systems neuroscience"[Journal]) OR ("Human brain mapping"[Journal]) OR ("International journal of psychophysiology : official journal of the International Organization of Psychophysiology"[Journal]) OR ("Journal of affective disorders"[Journal]) OR ("Journal of autism and developmental disorders"[Journal]) OR ("Journal of cognitive neuroscience"[Journal]) OR ("Journal of neurolinguistics"[Journal]) OR ("Journal of neurology, neurosurgery, and psychiatry"[Journal]) OR ("Journal of neurophysiology"[Journal]) OR ("Journal of neuropsychology"[Journal]) OR ("Journal of neuroscience methods"[Journal]) OR ("Journal of neuroscience research"[Journal]) OR ("Journal of psychiatry & neuroscience : JPN"[Journal]) OR ("Language, cognition and neuroscience"[Journal]) OR ("Nature neuroscience"[Journal]) OR ("NeuroImage"[Journal]) OR ("NeuroImage. Clinical"[Journal]) OR ("Neurobiology of aging"[Journal]) OR ("Neurobiology of learning and memory"[Journal]) OR ("Neuron"[Journal]) OR ("Neurophysiologie clinique = Clinical neurophysiology"[Journal]) OR ("Neuropsychologia"[Journal]) OR ("Neuropsychologia"[Journal]) OR ("Neuroscience letters"[Journal]) OR ("Neuroscience research"[Journal]) OR ("PLoS computational biology"[Journal]) OR ("Pain"[Journal]) OR ("PloS one"[Journal]) OR ("Proceedings of the National Academy of Sciences of the United States of America"[Journal]) OR ("Progress in brain research"[Journal]) OR ("Psychiatry research"[Journal]) OR ("Psychopharmacology"[Journal]) OR ("Schizophrenia bulletin"[Journal]) OR ("Schizophrenia research"[Journal]) OR ("Social cognitive and affective neuroscience"[Journal]) OR ("Stroke"[Journal]) OR ("The European journal of neuroscience"[Journal]) OR ("The Journal of neuroscience : the official journal of the Society for Neuroscience"[Journal]) OR ("Topics in cognitive science"[Journal]) OR ("Trends in cognitive sciences"[Journal]) OR ("Vision research"[Journal]) OR ("Visual cognition"[Journal]) OR ("Frontiers in aging neuroscience"[Journal]) OR ("Hippocampus"[Journal]) OR ("Hormones and behavior"[Journal]) OR ("Journal of computational neuroscience"[Journal]) OR ("Journal of neurodevelopmental disorders"[Journal]) OR ("Journal of the neurological sciences"[Journal]) OR ("J Neuroimaging"[Journal]) OR ("Learning & behavior"[Journal]) OR (fMRI[Abstract]) OR ("functional MRI"[Abstract]) OR "vbm" OR "neural correlates"
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