ugly stuff. beware.

neurosynth · May 29, 2015 · 099cb4d · 099cb4d
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Showing 21 changed files with 585 additions and 54 deletions.
diff --git a/.dropbox b/.dropbox
@@ -0,0 +1 @@
+{"tag": "shared", "ns": 911126537}
diff --git a/Icon b/Icon
diff --git a/data b/data
diff --git a/docs/development.rst b/docs/development.rst
@@ -0,0 +1,12 @@
+
+Neurosynth developer guide
+==========================
+
+Development environment
+-----------------------
+
+Testing
+-------
+
+Support
+-------
diff --git a/docs/generated/neurosynth.analysis.cluster.Clusterer.rst b/docs/generated/neurosynth.analysis.cluster.Clusterer.rst
@@ -16,7 +16,9 @@ neurosynth.analysis.cluster.Clusterer
       ~Clusterer.__init__
       ~Clusterer.cluster
       ~Clusterer.create_distance_matrix
+      ~Clusterer.dimension_reduction
       ~Clusterer.set_algorithm
+      ~Clusterer.set_reference_data
 
 
 

diff --git a/docs/generated/neurosynth.analysis.cluster.rst b/docs/generated/neurosynth.analysis.cluster.rst
@@ -14,6 +14,7 @@ neurosynth.analysis.cluster
       deepcopy
       isdir
       join
+      pairwise_distances
       time
 
 
@@ -25,7 +26,9 @@ neurosynth.analysis.cluster
    .. autosummary::
 
       Clusterer
+      FastICA
       Masker
+      RandomizedPCA
 
 
 

diff --git a/docs/generated/neurosynth.base.dataset.Dataset.rst b/docs/generated/neurosynth.base.dataset.Dataset.rst
@@ -27,6 +27,7 @@ neurosynth.base.dataset.Dataset
       ~Dataset.get_ids_by_peaks
       ~Dataset.get_image_data
       ~Dataset.get_mappables
+      ~Dataset.get_studies
       ~Dataset.load
       ~Dataset.save
       ~Dataset.to_json

diff --git a/docs/generated/neurosynth.base.dataset.rst b/docs/generated/neurosynth.base.dataset.rst
@@ -5,6 +5,13 @@ neurosynth.base.dataset
 
 
 
+   .. rubric:: Functions
+
+   .. autosummary::
+
+      deprecated
+      download
+
 
 
 

diff --git a/docs/generated/neurosynth.base.imageutils.rst b/docs/generated/neurosynth.base.imageutils.rst
@@ -9,7 +9,6 @@ neurosynth.base.imageutils
 
    .. autosummary::
 
-      convolve_image
       create_grid
       get_sphere
       img_to_json

diff --git a/docs/images/neurosynth_emotion.png b/docs/images/neurosynth_emotion.png
diff --git a/docs/images/neurosynth_language.png b/docs/images/neurosynth_language.png
diff --git a/docs/images/neurosynth_motor_control.png b/docs/images/neurosynth_motor_control.png
diff --git a/docs/images/neurosynth_pain.png b/docs/images/neurosynth_pain.png
diff --git a/docs/images/neurosynth_working_memory.png b/docs/images/neurosynth_working_memory.png
diff --git a/docs/images/pain_vs_touch.png b/docs/images/pain_vs_touch.png
diff --git a/docs/index.rst b/docs/index.rst
@@ -12,7 +12,9 @@ stuff that generates all the stuff you see at `http://neurosynth.org <http://neu
 .. toctree::
     :maxdepth: 2
 
+    quickstart
+    User Guide <user/index>
     getting_started
-    reference
-    GitHub repository <https://github.com/neurosynth/neurosynth>
-    getting_help
+    Developer Guide <development>
+    GitHub <https://github.com/neurosynth/neurosynth>
+    API Reference <reference>
diff --git a/docs/quickstart.rst b/docs/quickstart.rst