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Add ENV variable support #17

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KevinSayers opened this issue Jun 23, 2017 · 0 comments

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KevinSayers commented Jun 23, 2017

Add parsing for environment variables from CWL this will then map to Nextflow variables of the style env.foo

cwlVersion: v1.0
class: CommandLineTool
baseCommand: env
requirements:
  EnvVarRequirement:
    envDef:
      HELLO: $(inputs.message)
inputs:
  message: string
outputs: []

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