remove square brackets from job name

nextflow-io · Mar 7, 2024 · eebbd3f · eebbd3f
1 parent bb5c4f9
commit eebbd3f
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/modules/nextflow/src/main/groovy/nextflow/executor/LsfExecutor.groovy b/modules/nextflow/src/main/groovy/nextflow/executor/LsfExecutor.groovy
@@ -112,6 +112,13 @@ class LsfExecutor extends AbstractGridExecutor {
         return result
     }
 
+    @Override
+    String sanitizeJobName( String name ) {
+        // some implementations do not allow square brackets in the job name -- see #271
+        name = name.replace('[','').replace(']','')
+        // LSF does not allow more than 4094 characters for the job name string
+        name.size()>4094 ? name.substring(0,4094) : name
+    }
 
     /**
      * The command line to submit this job