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Fix tree output
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Signed-off-by: Marcel Ribeiro-Dantas <mribeirodantas@seqera.io>
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mribeirodantas committed Jun 18, 2024
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Showing 1 changed file with 55 additions and 26 deletions.
81 changes: 55 additions & 26 deletions docs/hello_nextflow/01_orientation.md
Original file line number Diff line number Diff line change
Expand Up @@ -23,35 +23,64 @@ tree /workspace/gitpod/hello-nextflow
You should see the following output:

```console title="Output"
hello-nextflow
/workspace/gitpod/hello-nextflow
├── data
│   ├── bam
│   ├── reads_father.bam
│   ├── reads_mother.bam
│   └── reads_son.bam
│   ├── intervals.list
│   ├── ref.tar.gz
│   ├── sample_bams.txt
│   └── samplesheet.csv
├── scripts
│   ├── hello-gatk-1.nf
│   ├── hello-gatk-2.nf
│   ├── hello-gatk-3.nf
│   ├── hello-gatk-4.nf
│   ├── hello-gatk-5.nf
│   ├── hello-gatk-6.nf
│   ├── hello-world-1.nf
│   ├── hello-world-2.nf
│   ├── hello-world-3.nf
│   ├── hello-world-4.nf
│   ├── hello-world-5.nf
│   ├── hello-world-6.nf
│   ├── hello-world-7.nf
│   └── hello-world-8.nf
├── greetings.txt
│ ├── bam
│ │ ├── reads_father.bam
│ │ ├── reads_mother.bam
│ │ └── reads_son.bam
│ ├── greetings.txt
│ ├── intervals.list
│ ├── ref.tar.gz
│ ├── sample_bams.txt
│ └── samplesheet.csv
├── hello-gatk.nf
├── hello-modules.nf
├── hello-nf-test.nf
├── hello-world.nf
└── nextflow.config
├── nextflow.config
└── scripts
├── hello-gatk-1.nf
├── hello-gatk-2.nf
├── hello-gatk-3.nf
├── hello-gatk-4.nf
├── hello-gatk-5.nf
├── hello-gatk-6.nf
├── hello-modules-1.nf
├── hello-modules-2.nf
├── hello-modules-3.nf
├── hello-world-10.nf
├── hello-world-1.nf
├── hello-world-2.nf
├── hello-world-3.nf
├── hello-world-4.nf
├── hello-world-5.nf
├── hello-world-6.nf
├── hello-world-7.nf
├── hello-world-8.nf
├── hello-world-9.nf
├── modules
│ └── local
│ ├── gatk
│ │ ├── haplotypecaller
│ │ │ └── main.nf
│ │ └── jointgenotyping
│ │ ├── main.nf
│ │ └── tests
│ │ └── inputs
│ │ ├── family_trio_map.tsv
│ │ ├── reads_father.bam.g.vcf
│ │ ├── reads_father.bam.g.vcf.idx
│ │ ├── reads_mother.bam.g.vcf
│ │ ├── reads_mother.bam.g.vcf.idx
│ │ ├── reads_son.bam.g.vcf
│ │ └── reads_son.bam.g.vcf.idx
│ └── samtools
│ └── index
│ └── main.nf
└── nextflow.config

12 directories, 43 files

```

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