Skip to content

Latest commit

 

History

History
45 lines (30 loc) · 1.18 KB

upgrading.rst

File metadata and controls

45 lines (30 loc) · 1.18 KB
Raw

Upgrading

This page describes how to upgrade the Nextstrain CLI--the nextstrain command--itself, without also upgrading the entire Nextstrain docs:runtime.

The first step is to figure out what kind of Nextstrain CLI installation you have.

If you run conda activate nextstrain before running nextstrain commands, then you're using a Conda-based installation like we describe in the Nextstrain installation steps <docs:install>. In this case, run the following to upgrade:

conda activate nextstrain
mamba update -c conda-forge -c bioconda nextstrain-cli

Otherwise, you're using another installation method and running:

$ nextstrain check-setup
A new version of nextstrain-cli, X.Y.Z, is available!  You're running A.B.C.

Upgrade by running:

    [UPGRADE COMMAND]

Testing your setup…
…

will suggest a command to run to upgrade nextstrain. Run the suggested command to perform the upgrade.

Either way, you can check the new version that was installed by running:

$ nextstrain version
nextstrain.cli 3.2.1