This series of tutorials explains how to use an existing Nextstrain pathogen repositories <pathogen repository>. These tutorials explore running workflows in Nextstrain pathogen repositories that are more complex than the example Zika workflow covered in the earlier tutorial<../running-a-phylogenetic-workflow>.
The tutorials will use the Nextstrain Zika repository as an example pathogen repository and each one covers an individual workflow within the repository.
running-an-ingest-workflow