New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add comprehensive filter steps #54

Closed

nvnieuwk opened this issue Oct 25, 2023 · 2 comments

Labels

Member

nvnieuwk commented Oct 25, 2023

Description of feature

After Jasmine some filter steps should still be added.

A possibility to filter commonly occurring variants given through an input VCF
A way to hard filter based on fields (like you can do with bcftools filter)

nvnieuwk added the enhancement label

Member Author

nvnieuwk commented Nov 7, 2023

=> Add annotations from the input VCF with vcfanno => filter on these annotations to remove common variants

Member Author

nvnieuwk commented Nov 7, 2023

Added in #55

nvnieuwk closed this as completed

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment