Not a valid path value: 'null'

[guillaumecharbonnier]

Description of the bug

Unable to complete any workflow except the "test" one.

Command used and terminal output

nextflow run nf-core/circrna -profile test_full,docker -r dev

Error executing process > 'NFCORE_CIRCRNA:CIRCRNA:CIRCRNA_DISCOVERY:CIRCEXPLORER2_REFERENCE (null)'

Caused by:  Not a valid path value: 'null'

Relevant files

nextflow.log

System information

• N E X T F L O W ~ version 22.10.4
• Desktop
• local
• docker
• Ubuntu 22 LTS
• nf-core/circrna v1.0.0-g51abcba

[nictru]

This is because the iGenomes config is not up-to-date. The genome configuration which is used in the test_full example is not containing a gtf file for the configured genome R64-1-1. However, the version of the iGenomes configuration that is used in the rnaSeq-Pipeline contains the necessary files.

I will update the iGenomes file and open a PR.