Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Handle spike sequences correctly #12

Closed
pinin4fjords opened this issue Nov 1, 2022 · 1 comment · Fixed by #18
Closed

Handle spike sequences correctly #12

pinin4fjords opened this issue Nov 1, 2022 · 1 comment · Fixed by #18
Labels
enhancement New feature or request
Milestone

Comments

@pinin4fjords
Copy link
Member

Description of feature

Where quantification has been undertaken in the presence of technical controls (e.g ERCC spikes with RNA-seq), then this workflow should be able to handle those controls effectively.

This should involve supplying a list of technical control feature names for handling by the appropriate modules (e.g. DESeq2 for RNA-seq).

Issue for module level change required in DESeq2 is nf-core/modules#2440

@pinin4fjords pinin4fjords added the enhancement New feature or request label Nov 1, 2022
@pinin4fjords
Copy link
Member Author

Module-level feature added at nf-core/modules#2534

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
1 participant