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Where quantification has been undertaken in the presence of technical controls (e.g ERCC spikes with RNA-seq), then this workflow should be able to handle those controls effectively.
This should involve supplying a list of technical control feature names for handling by the appropriate modules (e.g. DESeq2 for RNA-seq).
Description of feature
Where quantification has been undertaken in the presence of technical controls (e.g ERCC spikes with RNA-seq), then this workflow should be able to handle those controls effectively.
This should involve supplying a list of technical control feature names for handling by the appropriate modules (e.g. DESeq2 for RNA-seq).
Issue for module level change required in DESeq2 is nf-core/modules#2440
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