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Requests: Enhancements to DESeq2 csv outputs and PDF outputs #276

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dshechter opened this issue Jun 4, 2024 · 0 comments
Open

Requests: Enhancements to DESeq2 csv outputs and PDF outputs #276

dshechter opened this issue Jun 4, 2024 · 0 comments
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enhancement New feature or request

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@dshechter
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Description of feature

As discussed on slack, it would be great if the output DESeq2 csv differential files could have both gene_id and gene_name (or Symbol or whatever) included. Right now, only the gene_id is included. We'll have to add back the Name/Symbol for clarity and ease of distribution.

Also, it would be good to output PDFs instead of, or in addition to, pngs for the various graphic files.

Finally, setting the maximum number of annotations, or give a text file of genes to annotate, in volcano plots would help readability.

Thanks

@dshechter dshechter added the enhancement New feature or request label Jun 4, 2024
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