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Input BAM files overwritten and emptied when using same filename as ID #1051

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PCQuilis opened this issue Feb 9, 2024 · 1 comment · Fixed by #1052
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Input BAM files overwritten and emptied when using same filename as ID #1051

PCQuilis opened this issue Feb 9, 2024 · 1 comment · Fixed by #1052
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bug Something isn't working
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2.5.1 - Bopfingen...

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@PCQuilis
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PCQuilis commented Feb 9, 2024

Check Documentation

I have checked the following places for your error:

Description of the bug

Eager pipeline overwrites my input BAM files with empty files at the samtools filter step, when using the same file name as the output of this step when providing unmapped files.
@PCQuilis PCQuilis added the bug Something isn't working label Feb 9, 2024
@TCLamnidis TCLamnidis added this to the 2.5.1 - Bopfingen (patch) milestone Feb 13, 2024
@TCLamnidis TCLamnidis mentioned this issue Feb 16, 2024
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@TCLamnidis
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Fixed by #1052

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Patch 2.5.1 nf-core/eager
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@TCLamnidis @PCQuilis