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Add pipeline specific Institutional configs #286

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jfy133 opened this issue Nov 25, 2019 · 2 comments
Closed

Add pipeline specific Institutional configs #286

jfy133 opened this issue Nov 25, 2019 · 2 comments
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feature
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hackathon-scilifelab-2019
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V2.1 "Ravensburg"

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jfy133 commented Nov 25, 2019

Is your feature request related to a problem? Please describe.

Some tools are highly dependent on the context (input/output sizes, e.g. database in MALT), and parameters such as memory, CPUs, or special modules need customised at a pipeline level.

@maxulysse implemented this for Sarek (as described here), and the system described there would be highly useful also for EAGER - particularly for MALT.
@jfy133 jfy133 added this to the V2.1 "Ulm" milestone Nov 25, 2019
@jfy133 jfy133 added this to Beginner tasks in hackathon-scilifelab-2019 Dec 4, 2019
@jfy133 jfy133 self-assigned this Dec 4, 2019
@jfy133 jfy133 added the feature label Dec 4, 2019
@jfy133 jfy133 moved this from Beginner tasks to Reviews needed in hackathon-scilifelab-2019 Dec 5, 2019
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jfy133 commented Dec 5, 2019

Part 1: nf-core/configs#103

@jfy133 jfy133 mentioned this issue Dec 6, 2019
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jfy133 commented Dec 12, 2019

Completed: #315

@jfy133 jfy133 closed this as completed Dec 12, 2019
hackathon-scilifelab-2019 automation moved this from Reviews needed to Done Dec 12, 2019
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