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Add parameter to BAKTA : --skip-plot #214

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Darcy220606 opened this issue Feb 6, 2023 · 3 comments · Fixed by #235
Closed

Add parameter to BAKTA : --skip-plot #214

Darcy220606 opened this issue Feb 6, 2023 · 3 comments · Fixed by #235
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enhancement Improvement for existing functionality
Milestone
1.1 - British Bea...

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@Darcy220606
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Description of feature

For samples containing more than 200 contigs the workflow with BAKTA spits an error due to the circos plot that cannot be generated. Adding this feature circumvents this error.
@Darcy220606 Darcy220606 added the enhancement Improvement for existing functionality label Feb 6, 2023
@jfy133
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jfy133 commented Feb 8, 2023

Or maybe dynamically add that flag, if we can calculate the number of contigs?

@jfy133 jfy133 added this to the Second Release milestone Feb 8, 2023
@jfy133
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jfy133 commented Feb 8, 2023

Lets see how often this comes up

@jfy133 jfy133 mentioned this issue Mar 8, 2023
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@jfy133 jfy133 linked a pull request Mar 8, 2023 that will close this issue
Big Bakta update #235
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@jasmezz
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jasmezz commented Mar 27, 2023

Should have been closed already with #235

@jasmezz jasmezz closed this as completed Mar 27, 2023
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enhancement Improvement for existing functionality
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1.1 - British Beans on Toast
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Big Bakta update nf-core/funcscan
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@jfy133 @jasmezz @Darcy220606