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Have MultiQC output display pipeline summary tables #57
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TODO: Review how many of the tools COULD actually could have MultiQC modules, if only small fraction, drop MultiQC and use use our own custom standardisation scripts. |
Or only make modules for displaying tables from hAMRronisation, the amp-standardisation one from Mortiz and Anan, and something(?) for antisSMASH (that might work as a stadnalone) |
After reviewing all the tools, very few actually produce useful log files or summary statistics (agreed with @louperelo @Darcy220606 @jasmezz ). We will instead investigate for inserting tables from hAMRonisation, and Anan's and Moritz' tool |
After further thinking, it doesn't make sense to summarise these in MultiQC at all. Essentially people want a single table of all the tools of the functional category, which then can filter the probability column to find good hits. And nothing more for this step of a workflow. Therefore, we will drop MultiQC, we will not make the custom shiny app, but rather focus on having a single summary table,and a single 'tool-aggregated' results table per functiaon category.
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Description of feature
Our modules (first release):
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