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main.nf.test
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main.nf.test
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nextflow_workflow {
name "Test Workflow FASTA_EXPLORE_SEARCH_PLOT_TIDK"
script "../main.nf"
workflow "FASTA_EXPLORE_SEARCH_PLOT_TIDK"
config './nextflow.config'
tag "subworkflows"
tag "subworkflows_nfcore"
tag "subworkflows/fasta_explore_search_plot_tidk"
tag "fasta_explore_search_plot_tidk"
tag "seqkit/seq"
tag "seqkit/sort"
tag "tidk/explore"
tag "tidk/search"
tag "tidk/plot"
test("homo_sapiens-genome_fasta-genome_21_fasta") {
when {
workflow {
"""
input[0] = Channel.of(
[
[ id:'test' ],
file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
],
[
[ id:'test2' ],
file(params.test_data['homo_sapiens']['genome']['genome_21_fasta'], checkIfExists: true)
]
)
input[1] = Channel.of(
[
[ id:'test' ],
'TTAGGG'
],
[
[ id:'test2' ],
'TTAGGG'
]
)
"""
}
}
then {
assertAll(
{ assert workflow.success},
{ assert snapshot(workflow.out).match()}
)
}
}
test("homo_sapiens-genome_fasta-genome_21_fasta-partial_apriori-stub") {
options '-stub'
when {
workflow {
"""
input[0] = Channel.of(
[
[ id:'test' ],
file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
],
[
[ id:'test2' ],
file(params.test_data['homo_sapiens']['genome']['genome_21_fasta'], checkIfExists: true)
]
)
input[1] = Channel.of(
[
[ id:'test' ],
'TTAGGG'
]
)
"""
}
}
then {
assertAll(
{ assert workflow.success},
{ assert snapshot(workflow.out).match()}
)
}
}
test("homo_sapiens-genome_fasta-genome_21_fasta-no_apriori-stub") {
options '-stub'
when {
workflow {
"""
input[0] = Channel.of(
[
[ id:'test' ],
file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
],
[
[ id:'test2' ],
file(params.test_data['homo_sapiens']['genome']['genome_21_fasta'], checkIfExists: true)
]
)
input[1] = []
"""
}
}
then {
assertAll(
{ assert workflow.success},
{ assert snapshot(workflow.out).match()}
)
}
}
}