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This repository has been archived by the owner on May 6, 2024. It is now read-only.
The commands in the documentation on nf-co.re and in this repository are wrong.
On the banner on the right-hand side of https://nf-co.re/quantms, it says this pipeline can be run with:
$ nextflow run nf-core/quantms -r 1.0 -profile test --outdir ../outdir
N E X T F L O W ~ version 22.10.4
Unknown configuration profile: 'test'
Did you mean one of these?
oist
In the README.md in this repository, it says it can be run with:
$ nextflow run nf-core/quantms -profile test,singularity --input project.sdrf.tsv --database protein.fasta --outdir ../outdir
N E X T F L O W ~ version 22.10.4
Project `nf-core/quantms` is currently stickied on revision: 1.0 -- you need to explicitly specify a revision with the option `-r`in order to use it
Passing the -r makes it fail like the previous one.
Description of the bug
The commands in the documentation on nf-co.re and in this repository are wrong.
On the banner on the right-hand side of https://nf-co.re/quantms, it says this pipeline can be run with:
In the
README.md
in this repository, it says it can be run with:Passing the
-r
makes it fail like the previous one.Perhaps going forward the config should assign one of the
test_*
astest
, which is what other workflows with multiple tests do.The text was updated successfully, but these errors were encountered: