The default --miso_genes are invalid when --gencode is specified and cause the pipeline to fail #78
Labels
bug
Something isn't working
Comments
|
Hey @amizeranschi , thank you for highlighting that. The problem refers to the gtf provided more than to the --gencode option. The pipeline has been designed to work with all the genomes and annotations, so we are going to fix that issue by changing some default options in the configuration file, leaving those IDs only for testing purpose. |
|
Could you please share a bit of info about how this issue has been fixed? |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Description of the bug
Basically what the title says. When running the pipeline with
--gencode, the default value for--miso_genesshould be"ENSG00000004961.15, ENSG00000005302.19, ENSG00000147403.18", otherwise the pipeline will fail to run properly.More info can be found here: #72 (comment)
Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: