-
Notifications
You must be signed in to change notification settings - Fork 29
/
meta.yml
52 lines (52 loc) · 1.45 KB
/
meta.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
name: fastqc
description: Run FastQC on sequenced reads
keywords:
- quality control
- qc
- adapters
- fastq
tools:
- fastqc:
description: |
FastQC gives general quality metrics about your reads.
It provides information about the quality score distribution
across your reads, the per base sequence content (%A/C/G/T).
You get information about adapter contamination and other
overrepresented sequences.
homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
licence: ["GPL-2.0-only"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- html:
type: file
description: FastQC report
pattern: "*_{fastqc.html}"
- zip:
type: file
description: FastQC report archive
pattern: "*_{fastqc.zip}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@drpatelh"
- "@grst"
- "@ewels"
- "@FelixKrueger"