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meta.yml
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meta.yml
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name: gatk4_indexfeaturefile
description: Creates an index for a feature file, e.g. VCF or BED file.
keywords:
- index
- feature
tools:
- gatk4:
description: Genome Analysis Toolkit (GATK4)
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
tool_dev_url: https://github.com/broadinstitute/gatk
doi: "10.1158/1538-7445.AM2017-3590"
licence: ["BSD-3-clause"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- feature_file:
type: file
description: VCF/BED file
pattern: "*.{vcf,vcf.gz,bed,bed.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- index:
type: file
description: Index for VCF/BED file
pattern: "*.{tbi,idx}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@santiagorevale"