-
Notifications
You must be signed in to change notification settings - Fork 29
/
meta.yml
43 lines (43 loc) · 1.31 KB
/
meta.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
name: gatk4_mergevcfs
description: Merges several vcf files
keywords:
- vcf
- merge
tools:
- gatk4:
description: |
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
with a primary focus on variant discovery and genotyping. Its powerful processing engine
and high-performance computing features make it capable of taking on projects of any size.
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
doi: 10.1158/1538-7445.AM2017-3590
licence: ["Apache-2.0"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test']
- vcf:
type: list
description: Two or more VCF files
pattern: "*.{vcf,vcf.gz}"
- ref_dict:
type: file
description: Optional Sequence Dictionary as input
pattern: "*.dict"
- use_ref_dict:
type: boolean
description: Specify whether or not to use a given reference dictionary
output:
- vcf:
type: file
description: merged vcf file
pattern: "*.vcf.gz"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@kevinmenden"