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Problems with miRTrace output #44
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This used to happen with me, were you running on a cluster if yes then you should in the cluster config file, assign more memory to processes |
Hi, I tried assigning more memory in general and specifically in the miRTrace process, but it still failed. I finally installed miRTrace and run it that way, but still the problem is still there. How many memory did you use? I have a put as a maximum amount of resources 200GB and 16 cpus. |
Can you share the log files? Also in the .nextflow.log get the logs from mirTrace work dir (the temp folder that is created) also |
Hi, sorry, I was doing some tests and I had to rerun the pipeline. in the .command.log in the miRTrace work dir I have: The .command.err contains exactly the same: |
Hi,
I was running the pipeline with 40 samples and everything worked well, but at the end I didn't obtain the mirtrace files (mirtrace-report.html, mirtrace-results.json, etc.), I only obtained the qc_passed_reads.all.collapsed and qc_passed_reads.rnatype_unknown.collapsed.
Nonetheless, the pipeline was completed successfully and I think that there are no other errors. When I run the pipeline only with 10 samples everything seems to work well, I don't know which can be the problem...
Thank you very much!
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