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Minimal test dataset #5

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drpatelh opened this issue Mar 30, 2020 · 4 comments
Closed

Minimal test dataset #5

drpatelh opened this issue Mar 30, 2020 · 4 comments
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help wanted Extra attention is needed WIP Work in progress

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@drpatelh
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drpatelh commented Mar 30, 2020

Much like #4 but this dataset has to be uploaded to nf-core/test-datasets so we can use GitHub Actions CI to perform an end-to-end test of the pipeline for all PRs.

Maybe we can use some of the data @thanhleviet added here for now and then refine as required:
https://github.com/nf-core/test-datasets/tree/covid19

I have created a branch called viralrecon thats an exact copy of covid19 above:
https://github.com/nf-core/test-datasets/tree/viralrecon

@drpatelh drpatelh added the help wanted Extra attention is needed label Mar 30, 2020
@saramonzon
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We are working on this, we are going to upload some data using SISPA from Wisconsin and some data from an amplicon experiment.

@saramonzon saramonzon added the WIP Work in progress label Mar 30, 2020
@svarona
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svarona commented Mar 31, 2020

I have already created a pull request in test-datasets/viralrecon

@drpatelh
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Thanks @svarona 🕶️ I will have a look in the morning.

@drpatelh
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drpatelh commented Apr 7, 2020

This is now resolved! Thanks @svarona @saramonzon 😸

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