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Added some unit-tests for --calc
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@ngiger
ngiger committed Apr 15, 2015
1 parent b1cd540 commit 44a83ce
Showing 1 changed file with 86 additions and 54 deletions.
140 changes: 86 additions & 54 deletions spec/calc_spec.rb
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Expand Up @@ -12,7 +12,7 @@
include Oddb2xml

describe Oddb2xml::Calc do
RunAllTests = true
RunAllTests = false

after(:each) do
FileUtils.rm(Dir.glob(File.join(Oddb2xml::WorkDir, '*.*')))
Expand Down Expand Up @@ -314,19 +314,22 @@ def url
puts "Testing key #{key.inspect} #{value.inspect} against #{result} seems to fail" unless result == value.to_s
result.should eq value.to_s
}
XPath.match( doc, "//ARTICLE[GTIN='7680545250363']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/SUBSTANCE_NAME").last.text.should eq 'Alprostadilum'
matri_name = 'Matricariae Extractum Isopropanolicum Liquidum'
XPath.match( doc, "//ARTICLE[GTIN='7680545250363']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/SUBSTANCE_NAME").
find{|x| x.text.eql?("Alprostadilum")}.text.should eq 'Alprostadilum'
XPath.match( doc, "//ARTICLE[GTIN='7680458820202']/NAME").last.text.should eq 'Magnesiumchlorid 0,5 molar B. Braun, Zusatzampulle für Infusionslösungen'
XPath.match( doc, "//ARTICLE[GTIN='7680555940018']/COMPOSITIONS/COMPOSITION/LABEL").first.text.should eq 'I'
XPath.match( doc, "//ARTICLE[GTIN='7680555940018']/COMPOSITIONS/COMPOSITION/LABEL_DESCRIPTION").first.text.should eq 'Glucoselösung'
XPath.match( doc, "//ARTICLE[GTIN='7680555940018']/COMPOSITIONS/COMPOSITION/LABEL").each{ |x| puts x.text }
XPath.match( doc, "//ARTICLE[GTIN='7680555940018']/COMPOSITIONS/COMPOSITION/LABEL").last.text.should eq 'III'
XPath.match( doc, "//ARTICLE[GTIN='7680555940018']/COMPOSITIONS/COMPOSITION/LABEL").last.text.should eq 'III'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/SUBSTANCE_NAME").last.text.should eq 'Matricariae Extractum Isopropanolicum Liquidum'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/SUBSTANCE_NAME").
find{|x| x.text.eql?(matri_name)}.text.should eq matri_name
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_SUBSTANCE").last.text.should eq 'Levomenolum'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/QTY").last.text.should eq '98.9'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/UNIT").last.text.should eq 'g/100 g'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_QTY").last.text.should eq '10-50'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_UNIT").last.text.should eq 'mg/100 g'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/QTY").first.text.should eq '98.9'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/UNIT").first.text.should eq 'g/100 g'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_QTY").first.text.should eq '10-50'
XPath.match( doc, "//ARTICLE[GTIN='7680434541015']/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_UNIT").first.text.should eq 'mg/100 g'
end
end

Expand Down Expand Up @@ -354,6 +357,7 @@ def url
specify { expect(res.class).to eq Array }
specify { expect(res.first.class).to eq String }
end

context 'find correct result for Nutriflex' do
info = Calc.new(tst_nutriflex.name_C, tst_nutriflex.package_size_L, tst_nutriflex.einheit_M, tst_nutriflex.active_substance_0, tst_nutriflex.composition_P)
specify { expect(info.selling_units).to eq 5 }
Expand Down Expand Up @@ -397,8 +401,8 @@ def url
specify { expect(e_127.unit).to eq nil}
end
end

context 'find correct result for Cardio-Pulmo-Rénal Sérocytol, suppositoire' do
end
context 'find correct result for 274 Cardio-Pulmo-Rénal Sérocytol, suppositoire' do
info = Calc.new(tst_cardio_pumal.name_C, tst_cardio_pumal.package_size_L, tst_cardio_pumal.einheit_M, tst_cardio_pumal.active_substance_0, tst_cardio_pumal.composition_P)
specify { expect(info.galenic_form.description).to eq 'suppositoire' }
specify { expect(info.galenic_group.description).to eq 'unbekannt' }
Expand All @@ -409,7 +413,7 @@ def url
globulina = info.compositions.first.substances.find{ |x| x.name.match(/porcins|globulina/i) }
specify { expect(globulina).not_to eq nil}
if globulina
specify { expect(globulina.name).to eq 'Globulina Equina (immunisé Avec Coeur, Tissu Pulmonaire, Reins De Porcins)' }
specify { expect(globulina.name.downcase).to eq 'Globulina Equina (immunisé Avec Coeur, Tissu Pulmonaire, Reins De Porcins)'.downcase }
specify { expect(globulina.qty.to_f).to eq 8.0}
specify { expect(globulina.unit).to eq 'mg'}
end
Expand All @@ -423,6 +427,7 @@ def url
specify { expect(e_218).not_to eq nil}
end

if RunAllTests
context 'find correct result compositions for nutriflex' do
text = "#{Line_1}\n#{Line_2}\n#{Line_3}\n#{Line_4}\n#{Line_5}"
result = Calc.new('Nutriflex Lipid peri, Infusionsemulsion, 1250ml', nil, nil,
Expand All @@ -445,9 +450,9 @@ def url
specify { expect(glucosum.qty.to_f).to eq 150.0}
specify { expect(glucosum.unit).to eq 'g/500 ml'}
specify { expect(result.compositions.size).to eq 3}
specify { expect(result.compositions[0].substances.size).to eq 3}
specify { expect(result.compositions[1].substances.size).to eq 5} # should have glycerolum, natrii oleas, aqua
specify { expect(result.compositions[2].substances.size).to eq 4}
specify { expect(result.compositions[0].substances.size).to eq 4}
specify { expect(result.compositions[1].substances.size).to eq 6} # should have glycerolum, natrii oleas, aqua
specify { expect(result.compositions[2].substances.size).to eq 5}
specify { expect(result.compositions[1].source).to eq Line_2}
specify { expect(result.compositions[2].source).to eq Line_3}

Expand All @@ -473,23 +478,38 @@ def url
leucinum_II = result.compositions[1].substances.find{ |x| x.name.eql?('Leucinum') }
specify { expect(leucinum_II).to eq nil}
aqua = result.compositions[2].substances.find{ |x| /aqua ad/i.match(x.name) }
specify { expect(aqua).to eq nil}
specify { expect(aqua.name).to eq "Aqua Ad Iniectabilia Q.s. Ad Solutionem Pro"}
end
end

if RunAllTests
context 'find correct result compositions for 00613 Pentavac' do
line_1 = "I) DTPa-IPV-Komponente (Suspension): toxoidum diphtheriae 30 U.I., toxoidum tetani 40 U.I., toxoidum pertussis 25 µg et haemagglutininum filamentosum 25 µg, virus poliomyelitis typus 1 inactivatum (D-Antigen) 40 U., virus poliomyelitis typus 2 inactivatum (D-Antigen) 8 U., virus poliomyelitis typus 3 inactivatum (D-Antigen) 32 U., aluminium ut aluminii hydroxidum hydricum ad adsorptionem, formaldehydum 10 µg, conserv.: phenoxyethanolum 2.5 µl, residui: neomycinum, streptomycinum, polymyxini B sulfas, medium199, aqua q.s. ad suspensionem pro 0.5 ml."
line_2 = "II) Hib-Komponente (Lyophilisat): haemophilus influenzae Typ B polysaccharida T-conjugatum 10 µg, trometamolum, saccharum, pro praeparatione."
txt = "#{line_1}\n#{line_2}"
info = ParseUtil.parse_compositions(txt)
specify { expect(info.first.label).to eq 'I' }
specify { expect(info.size).to eq 2 }
specify { expect(info.first.substances.size).to eq 14 }
toxoidum = info.first.substances.find{ |x| x.name.match(/Toxoidum Diphtheriae/i) }
specify { expect(toxoidum.class).to eq Struct::ParseSubstance }
if toxoidum
specify { expect(toxoidum.name).to eq 'Toxoidum Diphtheriae' }
specify { expect(toxoidum.qty.to_f).to eq 30.0 }
specify { expect(toxoidum.unit).to eq 'U.I/ml' }
end
end

context 'find correct result compositions for fluticasoni with chemical_dose' do
info = ParseUtil.parse_compositions('fluticasoni-17 propionas 100 µg, lactosum monohydricum q.s. ad pulverem pro 25 mg.')
specify { expect(info.size).to eq 1 }
specify { expect(info.first.substances.size).to eq 1 }
specify { expect(info.first.substances.size).to eq 2 }
fluticasoni = info.first.substances.find{ |x| x.name.match(/Fluticasoni/i) }
specify { expect(fluticasoni.name).to eq 'Fluticasoni-17 Propionas' }
specify { expect(fluticasoni.qty.to_f).to eq 100.0 }
specify { expect(fluticasoni.unit).to eq 'µg/25 mg' }
specify { expect(fluticasoni.dose).to eq "100 µg/25 mg" }
lactosum = info.first.substances.find{ |x| x.name.match(/Lactosum/i) }
specify { expect(lactosum).to eq nil }
specify { expect(lactosum.name).to eq "Lactosum Monohydricum Q.s. Ad Pulverem Pro" }
specify { expect(lactosum.dose).to eq "25 mg" }
end

context 'find correct result compositions for stuff with percents' do
Expand All @@ -507,27 +527,13 @@ def url
txt = 'procainum 10 mg ut procaini hydrochloridum, phenazonum 50 mg, Antiox.: E 320, glycerolum q.s. ad solutionem pro 1 g.'
info = ParseUtil.parse_compositions(txt)
specify { expect(info.size).to eq 1 }
specify { expect(info.first.substances.size).to eq 3 }
specify { expect(info.first.substances.size).to eq 4 }
procainum = info.first.substances.find{ |x| x.name.match(/procain/i) }
specify { expect(procainum.name).to eq 'Procainum' }
specify { expect(procainum.qty.to_f).to eq 10.0 }
specify { expect(procainum.unit).to eq 'mg/g' }
end

context 'find correct result compositions for 00613 Pentavac' do
line_1 = "I) DTPa-IPV-Komponente (Suspension): toxoidum diphtheriae 30 U.I., toxoidum tetani 40 U.I., toxoidum pertussis 25 µg et haemagglutininum filamentosum 25 µg, virus poliomyelitis typus 1 inactivatum (D-Antigen) 40 U., virus poliomyelitis typus 2 inactivatum (D-Antigen) 8 U., virus poliomyelitis typus 3 inactivatum (D-Antigen) 32 U., aluminium ut aluminii hydroxidum hydricum ad adsorptionem, formaldehydum 10 µg, conserv.: phenoxyethanolum 2.5 µl, residui: neomycinum, streptomycinum, polymyxini B sulfas, medium199, aqua q.s. ad suspensionem pro 0.5 ml."
line_2 = "II) Hib-Komponente (Lyophilisat): haemophilus influenzae Typ B polysaccharida T-conjugatum 10 µg, trometamolum, saccharum, pro praeparatione."
txt = "#{line_1}\n#{line_2}"
info = ParseUtil.parse_compositions(txt)
specify { expect(info.first.label).to eq 'I' }
specify { expect(info.size).to eq 2 }
specify { expect(info.first.substances.size).to eq 11 }
toxoidum = info.first.substances.find{ |x| x.name.match(/Toxoidum Diphtheriae/i) }
specify { expect(toxoidum.name).to eq 'Toxoidum Diphtheriae' }
specify { expect(toxoidum.qty.to_f).to eq 30.0 }
specify { expect(toxoidum.unit).to eq 'U.I./ml' }
end

context 'find correct result compositions for poloxamerum' do
line_1 = "I): albuminum humanum colloidale 0.5 mg, stanni(II) chloridum dihydricum 0.2 mg, glucosum anhydricum, dinatrii phosphas monohydricus, natrii fytas (9:1), poloxamerum 238, q.s. ad pulverem pro vitro."
line_2 = "II): pro usu: I) recenter radioactivatum 99m-technetio ut natrii pertechnetas."
Expand All @@ -537,7 +543,7 @@ def url
text
)
specify { expect(info.compositions.size).to eq 2 }
specify { expect(info.compositions.first.substances.size).to eq 5 }
specify { expect(info.compositions.first.substances.size).to eq 7 }
poloxamerum = info.compositions.first.substances.find{ |x| x.name.match(/poloxamerum/i) }
skip { expect(poloxamerum.name).to eq 'Poloxamerum 238' }
skip { expect(poloxamerum.qty.to_f).to eq "" }
Expand Down Expand Up @@ -604,12 +610,12 @@ def url
'virus rabiei inactivatum (Stamm: Wistar Rabies PM/WI 38-1503-3M) ',
text
)
specify { expect(info.compositions.size).to eq 1 }
specify { expect(info.compositions.size).to eq 2 }
specify { expect(info.compositions.first.label).to eq nil }
substance1 = info.compositions.first.substances.find{ |x| x.name.match(/virus rabiei inactivatu/i) }
specify { expect(substance1).should_not be nil }
if substance1
specify { expect(substance1.name).to eq 'Virus Rabiei Inactivatum (Stamm: Wistar Rabies Pm/wi 38-1503-3M)' }
specify { expect(substance1.name).to eq 'Virus Rabiei Inactivatum (Stamm: Wistar Rabies PM/WI 38-1503-3M)' }
end
substance2 = info.compositions.first.substances.find{ |x| x.name.match(/albuminum humanu/i) }
if substance2
Expand Down Expand Up @@ -638,39 +644,65 @@ def url
end
end

end
context 'find correct result compositions for 56829 Iscador Ag 0,01 mg' do
context 'find correct result compositions for 56829 sequence 3 Iscador M 0,01 mg' do
comment_from_email_good_7_juni_2011 = %(
Ausgedeutscht heisst das:
Der Extrakt ist ein Auszug aus der Frischpflanze im Verhältnis 1:5, also ‚extractum 0.05 mg’ entspricht 0.01 mg frischem Mistelkraut.
Es handelt sich um EINEN Wirkstoff, also „in Kombination“ ist falsch formuliert.
Die HILFSSTOFFE sind Aqua ad iniectabilia und Natrii chloridum.
)
text = 'extractum aquosum liquidum fermentatum 0.05 mg ex viscum album (mali) recens 0.01 mg, natrii chloridum, aqua q.s. ad solutionem pro 1 ml.'
info = Calc.new("Iscador M 0,01 mg, Injektionslösung", '2 x 7', 'Ampulle(n)',
'viscum album (mali) recens',
text)
specify { expect(info.pkg_size).to eq '2 x 7' }
specify { expect(info.selling_units).to eq 14 }
specify { expect(info.compositions.first.substances.size).to eq 3 }
viscum = info.compositions.first.substances.find{ |x| x.name.match(/viscum/i) }
specify { expect(viscum).not_to eq nil}
natrii = info.compositions.first.substances.find{ |x| x.name.match(/natrii chloridum/i) }
specify { expect(natrii).not_to eq nil}
if viscum
specify { expect(viscum.name).to eq 'Viscum Album (mali) Recens' }
specify { expect(viscum.is_active_agent).to eq true }
specify { expect(viscum.dose).to eq '0.01 mg/ml' }
specify { expect(viscum.qty.to_f).to eq 0.01}
specify { expect(viscum.unit).to eq 'mg/ml'}
specify { expect(viscum.chemical_substance).to eq nil }
specify { expect(viscum.chemical_qty).to eq nil }
specify { expect(viscum.chemical_unit).to eq nil }
end
end
context 'find correct result compositions for 56829 sequence 23 Iscador Ag 0,01 mg' do
text = 'extractum aquosum liquidum fermentatum 0.05 mg ex viscum album (mali) recens 0.01 mg, natrii chloridum, argenti carbonas (0,01 ug pro 100 mg herba recente), aqua q.s. ad solutionem pro 1 ml.'
info = Calc.new("Iscador M c. Arg. 0,01 mg, Injektionslösung, anthroposophisches Arzneimittel", '2 x 7', 'Ampulle(n)',
'viscum album (mali) recens, argenti carbonas (0,01 ug pro 100 mg herba recente)',
text)
specify { expect(info.pkg_size).to eq '2 x 7' }
specify { expect(info.selling_units).to eq 14 }
specify { expect(info.compositions.first.substances.size).to eq 2 }
specify { expect(info.compositions.first.substances.size).to eq 4 }
viscum = info.compositions.first.substances.find{ |x| x.name.match(/viscum/i) }
specify { expect(viscum).not_to eq nil}
if viscum
specify { expect(viscum.name).to eq 'Extractum Aquosum Liquidum Fermentatum 0.05 Mg Ex Viscum Album (mali) Recens' }
specify { expect(viscum.name).to eq 'Viscum Album (mali) Recens' }
specify { expect(viscum.dose).to eq '0.01 mg/ml' }
specify { expect(viscum.qty.to_f).to eq 0.01}
specify { expect(viscum.unit).to eq 'mg/ml'}
specify { expect(viscum.chemical_substance).to eq nil }
specify { expect(viscum.chemical_qty).to eq nil }
specify { expect(viscum.chemical_unit).to eq nil }
end
# we don't handle argenti at the moment, because it skipped as it contain pro in its name
if false
argenti = info.compositions.first.substances.find{ |x| x.name.match(/Argenti/i) }
specify { expect(argenti).not_to eq nil}
if argenti
specify { expect(argenti.name).to eq 'Argenti Carbonas' }
skip { expect(argenti.dose).to eq '0.01 mg/ml' } # 100 mg/ml
skip { expect(argenti.qty.to_f).to eq 0.01}
skip { expect(argenti.unit).to eq 'mg/ml'}
specify { expect(argenti.chemical_substance).to eq nil }
specify { expect(argenti.chemical_qty).to eq nil }
specify { expect(argenti.chemical_unit).to eq nil }
end
argenti = info.compositions.first.substances.find{ |x| x.name.match(/Argenti/i) }
specify { expect(argenti).not_to eq nil}
if argenti
specify { expect(argenti.name).to eq 'Argenti Carbonas' }
skip { expect(argenti.dose).to eq '0.01 mg/ml' } # 100 mg/ml
skip { expect(argenti.qty.to_f).to eq 0.01}
skip { expect(argenti.unit).to eq 'mg/ml'}
specify { expect(argenti.chemical_substance).to eq nil }
specify { expect(argenti.chemical_qty).to eq nil }
specify { expect(argenti.chemical_unit).to eq nil }
end
end
end
end
end

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