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Checking all elements from XSD in oddb_calc.xml
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@ngiger
ngiger committed Nov 25, 2015
1 parent 2b29de7 commit c21d7ac
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85 changes: 65 additions & 20 deletions spec/calc_spec.rb
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Expand Up @@ -611,6 +611,8 @@ def url
end

describe Oddb2xml::Calc do
@@oddb_calc_xml = File.join(Oddb2xml::WorkDir, 'oddb_calc.xml')
puts "@@oddb_calc_xml ist now #{@@oddb_calc_xml}"

before(:all) do
@savedDir = Dir.pwd
Expand All @@ -621,22 +623,80 @@ def url
@run_time_options = '--calc --skip-download'
@options = Oddb2xml::Options.new
@options.parser.parse!(@run_time_options.split(' '))
@oddb_calc_xml = File.join(Oddb2xml::WorkDir, 'oddb_calc.xml')
@res = buildr_capture(:stdout){ Oddb2xml::Cli.new(@options.opts).run }
expect(File.exists?(@oddb_calc_xml)).to eq true
@doc = REXML::Document.new File.read(@oddb_calc_xml)
expect(File.exists?(@@oddb_calc_xml)).to eq true
@doc = REXML::Document.new File.read(@@oddb_calc_xml)
@nokogiri = Nokogiri::XML(File.read(@@oddb_calc_xml))
binding.pry unless @nokogiri
puts "nokogiri before all: #{@nokogiri.to_s.size}"
end

after(:all) do
Dir.chdir @savedDir if @savedDir and File.directory?(@savedDir)
end

context "Verify elements from XSD" do
date_regexp = /\d{4}-\d{2}-\d{2}T\d{2}:\d{2}:\d{2}[-+]\d{4}/
attribute_tests = [
['ARTICLES', 'CREATION_DATETIME', date_regexp],
['ARTICLES', 'PROD_DATE', date_regexp],
['ARTICLES', 'VALID_DATE', date_regexp],
['ARTICLES/ARTICLE', 'SHA256', /[a-f0-9]{32}/],
]

check_attributes(Nokogiri::XML(File.read(@@oddb_calc_xml)), attribute_tests)

element_tests = [
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/EXCIPIENS', /.*pro Vitro.*/],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/EXCIPIENS', /.Excipiens ad solutionem.*/],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/LABEL', 'I'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/LABEL', 'Solvens'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/LABEL_DESCRIPTION', 'Aminosäurenlösung'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/LABEL_DESCRIPTION', 'Fettemulsion'],
# ['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/DOSE_TEXT', 'mg'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/SALTS/SALT/SUBSTANCE_NAME', 'Ceftriaxonum Natricum'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/CORRESP', /4240 kJ pro 1 l/],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/CORRESP', /I\) et II\) et III\) corresp.*/],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_SUBSTANCE/DOSE_TEXT', '10-50 mg'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_SUBSTANCE/MORE_INFO', 'ratio: 1:2-2.8'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/CHEMICAL_SUBSTANCE/SUBSTANCE_NAME', 'Levomenolum'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/IS_ACTIVE_AGENT', 'false'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/IS_ACTIVE_AGENT', 'true'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/MORE_INFO', 'Praeparatio sicca'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/MORE_INFO', 'antiox.'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/QTY', '100'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/QTY', /4\.08/],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/SUBSTANCE_NAME', 'E 124'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/SUBSTANCE_NAME', 'Lamivudinum'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/UNIT', 'mg'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/UNIT', 'mg'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/UNIT', 'µg'],
['ARTICLES/ARTICLE/COMPOSITIONS/COMPOSITION/SUBSTANCES/SUBSTANCE/UNIT', /U\.I\.\/ml/],
['ARTICLES/ARTICLE/GALENIC_FORM', 'Infusionsemulsion'],
['ARTICLES/ARTICLE/GALENIC_FORM', 'Tropfen'],
['ARTICLES/ARTICLE/GALENIC_GROUP', 'Lösungsmittel'],
['ARTICLES/ARTICLE/GALENIC_GROUP', 'Tabletten'],
['ARTICLES/ARTICLE/GTIN', Oddb2xml::FRIDGE_GTIN],
['ARTICLES/ARTICLE/GTIN', Oddb2xml::ORPHAN_GTIN],
['ARTICLES/ARTICLE/MEASURE', 'Suppositorien'],
['ARTICLES/ARTICLE/MEASURE', /Ampulle\(n\)/],
['ARTICLES/ARTICLE/NAME', 'Apligraf'],
['ARTICLES/ARTICLE/NAME', 'Lansoyl, gelée'],
['ARTICLES/ARTICLE/PKG_SIZE', '1'],
['ARTICLES/ARTICLE/PKG_SIZE', '5 x 2500 ml'],
['ARTICLES/ARTICLE/PKG_SIZE', '75 mm'],
['ARTICLES/ARTICLE/SELLING_UNITS', '1'],
['ARTICLES/ARTICLE/SELLING_UNITS', '60'],
['ARTICLES/ARTICLE/SELLING_UNITS', 'unbekannt'],
]
check_elements( Nokogiri::XML(File.read(@@oddb_calc_xml)), element_tests)
end
context "when passing #{@run_time_options}" do
it 'should contain the new fields as per July 2015' do
# xml.GEN_PRODUCTION gen_production
# xml.INSULIN_CATEGORY insulin_category
# xml.DRUG_INDEX drug_index
expect(File.exists?(@oddb_calc_xml)).to eq true
expect(File.exists?(@@oddb_calc_xml)).to eq true
end

it 'should create a correct xml and a csv file' do
Expand All @@ -652,22 +712,7 @@ def url
oddb_calc_xsd = File.expand_path(File.join(File.dirname(__FILE__), '..', 'oddb_calc.xsd'))
expect(File.exists?(oddb_calc_xsd)).to eq true
xsd = Nokogiri::XML::Schema(File.read(oddb_calc_xsd))
doc = Nokogiri::XML(File.read(@oddb_calc_xml))
xsd.validate(doc).each do |error| expect(error).to be_nil end
end

it 'should create correct entries for narotin' do
gtin = '7680540151009'
ean12 = '7680' + sprintf('%05d',Tst_naropin.iksnr_A) + sprintf('%03d',Tst_naropin.pack_K)
ean13 = (ean12 + Oddb2xml.calc_checksum(ean12))
expect(ean13).to eq gtin

Tst_naropin.values_to_compare.each{
| key, value |
result = XPath.match( @doc, "//ARTICLE[GTIN='#{gtin}']/#{key.to_s.upcase}").first.text
puts "Testing key #{key.inspect} #{value.inspect} against #{result} seems to fail" unless result == value.to_s
expect(result).to eq value.to_s
}
xsd.validate(@nokogiri).each do |error| expect(error).to be_nil end
end

it 'should create correct entries for narotin' do
Expand Down
35 changes: 35 additions & 0 deletions spec/spec_helper.rb
View file
Expand Up @@ -167,6 +167,41 @@ def setup_server_mocks
end
end

def check_elements(nokogiri_doc, tests)
tests.each do |test|
field = test[0]
value = test[1]
it "should have correct entries #{value} for field #{field}" do
found = false
nokogiri_doc.search(field, nil, nil).each do |x|
if value.match(x.text)
found= true
break
end
end
expect(found).to be true
end
end
end

def check_attributes(nokogiri_doc, tests)
tests.each do |test|
path = test[0]
attribute = test[1]
value = test[2]
it "should have correct value #{value} for attribute #{attribute} in #{path}" do
found = false
nokogiri_doc.search(path, nil, nil).each do |x|
if value.match(x["#{attribute}"])
found= true
break
end
end
expect(found).to be true
end
end
end

RSpec.configure do |config|
config.run_all_when_everything_filtered = true
config.filter_run :focus
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