Skip to content

Commit

Permalink
DOC Document {fpkm} normalization
Browse files Browse the repository at this point in the history
This was missing even though it has been supported since NGLess 0.5
  • Loading branch information
luispedro committed Jan 20, 2021
1 parent 659a16d commit e1bd1b7
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions docs/sources/Functions.rst
Original file line number Diff line number Diff line change
Expand Up @@ -613,6 +613,8 @@ argument to True.
feature
- ``{scaled}`` is the result of the ``{normed}`` mode scaled up so that the
total number of counts is identical to the ``{raw}`` (within rounding error)
- ``{fpkm}`` is *fragments per 1000 bp per million fragments*, so it is normalized
by both the size of the feature and the number of fragments.

Unmapped inserts are included in the output if ``{include_minus1}`` is true
(default: ``False``).
Expand Down

0 comments on commit e1bd1b7

Please sign in to comment.